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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:196.0 nTPM
GTEx:196.0 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:261.2 nTPM
Mouse:582.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 196.0
Samples: 105

Max nTPM: 325.7
Min nTPM: 119.6
Std nTPM: 42.6
Median nTPM:
2_1 77 years, female 325.7
413_1 59 years, female 318.4
491_1 89 years, female 308.8
307_1 66 years, female 289.2
139_1 64 years, female 270.9
490_1 67 years, female 269.8
495_1 57 years, female 267.9
149_1 88 years, male 263.7
43_1 64 years, female 260.7
81_1 67 years, male 258.8
32_1 67 years, male 258.5
518_1 75 years, female 249.8
466_1 57 years, female 248.2
414_1 84 years, female 247.9
501_1 88 years, male 241.4
6_1 73 years, female 240.7
162_1 79 years, female 240.1
117_1 61 years, male 238.7
415_1 77 years, female 236.5
217_1 76 years, male 230.4
18_1 88 years, male 229.6
315_1 62 years, female 229.5
142_1 61 years, female 229.3
35_1 74 years, female 227.8
89_1 63 years, male 227.6
322_1 76 years, male 226.9
311_1 78 years, male 226.7
145_1 84 years, male 224.3
17_1 71 years, male 222.7
126_1 63 years, male 221.7
468_1 89 years, male 217.8
526_1 61 years, male 217.3
313_1 79 years, female 216.8
348_1 84 years, male 216.5
324_1 76 years, male 210.6
153_1 70 years, female 207.5
288_1 66 years, female 206.7
308_1 70 years, female 201.4
265_1 87 years, male 200.6
109_1 81 years, female 199.9
316_1 62 years, male 199.5
115_1 83 years, male 196.3
266_1 85 years, male 194.8
377_1 82 years, female 194.2
119_1 70 years, female 193.4
251_1 78 years, male 193.2
243_1 75 years, male 193.1
246_1 77 years, male 189.6
292_1 71 years, male 189.6
320_1 89 years, female 189.1
120_1 70 years, female 186.0
335_1 73 years, female 186.0
405_1 91 years, male 185.1
137_1 83 years, male 184.4
375_1 74 years, female 184.4
386_1 76 years, male 183.9
499_1 55 years, female 183.7
229_1 69 years, female 183.4
425_1 59 years, female 183.4
9_1 66 years, female 182.5
321_1 62 years, female 181.5
447_1 81 years, male 180.8
352_1 62 years, male 178.6
4_1 88 years, female 178.4
293_1 68 years, female 178.2
396_1 62 years, male 177.8
286_1 68 years, female 175.8
517_1 88 years, male 175.8
376_1 75 years, female 174.9
254_1 77 years, female 174.4
291_1 76 years, male 174.0
189_1 76 years, male 173.9
406_1 79 years, male 172.6
42_1 85 years, male 171.1
318_1 68 years, male 170.8
404_1 82 years, female 169.8
237_1 82 years, male 167.5
41_1 94 years, female 166.7
314_1 67 years, male 165.8
172_1 72 years, female 164.0
506_1 65 years, male 163.7
319_1 81 years, male 163.0
355_1 70 years, female 161.6
503_1 68 years, male 161.3
353_1 82 years, female 160.9
379_1 60 years, male 160.4
173_1 67 years, male 160.3
347_1 72 years, male 159.6
389_1 86 years, female 158.2
354_1 81 years, female 156.8
480_1 63 years, male 156.1
452_1 88 years, female 155.2
350_1 84 years, female 154.3
99_1 64 years, male 153.3
349_1 83 years, male 147.5
351_1 91 years, male 147.5
264_1 73 years, female 140.6
177_1 74 years, male 140.0
384_1 83 years, male 137.8
317_1 60 years, male 137.4
163_1 78 years, male 135.4
295_1 61 years, female 129.5
218_1 71 years, female 123.4
356_1 87 years, female 121.6
394_1 75 years, female 119.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 36.2
FF:10030-101E3 24-65 years, mixed 36.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.2
Pig sample Sample description nTPM
Retina
nTPM: 261.2
Samples: 4

Max nTPM: 297.0
Min nTPM: 248.0
Sample A Female 248.0
Sample B Female 297.0
Sample C Male 248.4
Sample D Male 251.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.1
Mouse sample Sample description nTPM
Retina
nTPM: 582.1
Samples: 4

Max nTPM: 615.9
Min nTPM: 525.4
Sample A Male 615.9
Sample B Male 586.0
Sample C Female 525.4
Sample D Female 601.0

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