MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.0 nTPM
HPA Brain:220.0 nTPM
GTEx:89.0 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:80.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 220.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 184.3
2586 Male, age 75, left hemisphere 299.0
2828 Female, age 72, unknown 238.6
2219 Male, age 76, both hemispheres 201.6
1827 Male, age 72, unknown 190.1
1833 Male, age 53, unknown 171.5
1870 Female, age 42, unknown 160.1
1830 Male, age 51, unknown 158.1
2411 Female, age 72, unknown 147.3
2666 Male, age 74, left hemisphere 141.3
2019 Male, age 18, unknown 135.8
Dorsal raphe nucleus
nTPM: 183.1
2016 Female, age 72, unknown 218.0
1828 Male, age 53, unknown 213.1
2047 Male, age 72, unknown 201.4
2298 Female, age 72, unknown 168.9
2750 Male, age 76, both hemispheres 114.2
Inferior colliculus
nTPM: 207.2
1848 Female, age 42, unknown 253.6
2849 Male, age 72, unknown 223.3
1890 Male, age 53, unknown 197.0
2097 Female, age 72, unknown 155.0
Median raphe nucleus
nTPM: 103.6
2220 Male, age 76, midline 103.6
Periaquaductal grey, anterior
nTPM: 220.0
2502 Female, age 75, unknown 247.5
1795 Male, age 51, unknown 210.7
1947 Male, age 18, unknown 201.7
Periaquaductal grey, dorsal
nTPM: 187.0
1840 Male, age 53, unknown 215.0
2464 Female, age 72, unknown 202.5
2850 Male, age 76, both hemispheres 189.7
1831 Male, age 72, unknown 140.6
Periaquaductal grey, lateral
nTPM: 200.6
2140 Male, age 76, both hemispheres 262.5
2053 Male, age 18, unknown 199.6
2272 Male, age 74, both hemispheres 139.9
Pretectal area
nTPM: 187.7
2316 Male, age 76, right hemisphere 247.7
2825 Male, age 18, unknown 215.8
2667 Female, age 75, unknown 214.1
1816 Male, age 51, unknown 210.2
1817 Female, age 42, unknown 189.3
1944 Female, age 72, unknown 186.9
1815 Male, age 53, unknown 172.7
2224 Female, age 72, unknown 168.9
2273 Male, age 74, both hemispheres 159.0
2407 Male, age 75, both hemispheres 152.8
2007 Male, age 72, unknown 147.1
Red nucleus
nTPM: 186.2
1954 Female, age 42, unknown 236.8
2769 Male, age 72, unknown 228.0
2588 Male, age 74, left hemisphere 226.9
2503 Female, age 72, unknown 222.4
2227 Male, age 72, unknown 216.8
1904 Male, age 53, unknown 197.9
1821 Female, age 72, unknown 187.1
2823 Male, age 76, right hemisphere 162.9
1865 Male, age 51, unknown 160.4
2725 Female, age 75, unknown 153.2
2785 Male, age 18, unknown 125.8
2584 Male, age 75, left hemisphere 116.6
Substantia nigra
nTPM: 179.1
1916 Female, age 42, unknown 241.3
2699 Male, age 18, unknown 225.2
2665 Male, age 74, both hemispheres 191.4
1851 Male, age 51, unknown 177.8
2241 Male, age 72, unknown 173.4
1889 Female, age 72, unknown 169.1
2590 Female, age 75, unknown 166.9
2583 Male, age 75, right hemisphere 164.5
2409 Female, age 72, unknown 163.8
1941 Male, age 53, unknown 117.4
Superior colliculus
nTPM: 187.3
2664 Male, age 75, both hemispheres 264.3
2261 Male, age 18, unknown 245.8
1839 Male, age 51, unknown 206.7
1796 Male, age 53, unknown 202.9
2087 Female, age 72, unknown 197.8
2668 Female, age 75, unknown 174.6
1895 Male, age 76, right hemisphere 168.4
1995 Male, age 72, unknown 155.4
2587 Male, age 74, left hemisphere 140.1
1913 Female, age 42, unknown 116.7
Ventral tegmental area
nTPM: 157.9
2410 Female, age 72, unknown 183.6
1915 Female, age 42, unknown 166.6
2021 Male, age 53, unknown 161.6
1942 Male, age 51, unknown 161.1
2218 Male, age 76, both hemispheres 140.9
2223 Female, age 72, unknown 133.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 89.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.0
Samples: 139

Max nTPM: 507.4
Min nTPM: 7.8
Std nTPM: 66.3
Median nTPM: 76.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 507.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 295.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 251.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 232.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 221.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 219.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 213.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 205.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 196.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 177.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 176.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.0
Samples: 4

Max nTPM: 51.7
Min nTPM: 36.4
Sample A Female 51.7
Sample B Female 36.4
Sample C Male 47.4
Sample D Male 48.5
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 55.4
Min nTPM: 43.8
Sample A Female 43.8
Sample B Female 55.4
Sample C Male 47.2
Sample D Male 49.0
Periaqueductal gray
nTPM: 47.1
Samples: 3

Max nTPM: 60.5
Min nTPM: 35.0
Sample B Female 60.5
Sample C Male 45.7
Sample D Male 35.0
Superior colliculi
nTPM: 47.2
Samples: 4

Max nTPM: 61.1
Min nTPM: 33.4
Sample A Female 61.1
Sample B Female 33.4
Sample C Male 45.0
Sample D Male 49.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 80.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.1
Samples: 4

Max nTPM: 86.5
Min nTPM: 70.5
Sample A Male 82.3
Sample B Male 70.5
Sample C Female 81.0
Sample D Female 86.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
100146154 Antisense, RP_110421_02_D11, Mouse strain C57BL/6J (56 days, male) 1.2
448 Antisense, RP_Baylor_102781, Mouse strain C57BL/6J (56 days, male) 0.0

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