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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:94.4 nTPM
HPA Brain:83.5 nTPM
GTEx:94.4 nTPM
FANTOM5:109.7 Scaled Tags Per Million
Pig:97.1 nTPM
Mouse:238.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.5
Sample id Sample description nTPM
Amygdala
nTPM: 83.5
2514 Male, age 75, right hemisphere 91.1
1987 Female, age 91, left hemisphere 90.7
2814 Male, age 76, right hemisphere 84.5
2695 Female, age 67, right hemisphere 79.9
2517 Female, age 94, left hemisphere 71.3
Basal amygdala
nTPM: 60.7
2110 Male, age 80, left hemisphere 72.9
2609 Male, age 75, right hemisphere 71.2
1955 Male, age 76, both hemispheres 69.1
2243 Female, age 91, right hemisphere 60.7
2685 Female, age 94, left hemisphere 52.5
2827 Female, age 67, right hemisphere 38.1
Central amygdala
nTPM: 72.4
1905 Male, age 76, both hemispheres 81.3
2826 Female, age 94, left hemisphere 78.6
2515 Male, age 75, right hemisphere 77.3
2701 Female, age 91, right hemisphere 63.1
2239 Male, age 80, left hemisphere 61.7
Corticomedial amygdala
nTPM: 67.3
2242 Female, age 91, right hemisphere 82.0
2428 Male, age 75, right hemisphere 81.3
2829 Male, age 80, left hemisphere 78.4
2240 Male, age 76, both hemispheres 65.8
2429 Female, age 94, left hemisphere 60.3
2535 Female, age 67, right hemisphere 36.1
Lateral amygdala
nTPM: 61.0
2516 Male, age 75, right hemisphere 72.8
1883 Male, age 76, both hemispheres 71.9
2534 Female, age 94, left hemisphere 64.3
2256 Male, age 80, left hemisphere 55.7
2830 Female, age 67, right hemisphere 52.0
2255 Female, age 91, right hemisphere 49.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 94.4
Samples: 152

Max nTPM: 184.9
Min nTPM: 47.2
Std nTPM: 25.4
Median nTPM: 90.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 184.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 180.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 166.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 161.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 160.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 152.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 144.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 139.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 135.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 134.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 130.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 130.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 129.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 129.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 127.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 123.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 122.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 122.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 121.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 120.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 120.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 118.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 118.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 115.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 115.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 115.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 115.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 114.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 114.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 113.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 113.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 112.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 110.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 109.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 109.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 107.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 106.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 106.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 105.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 105.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 104.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 104.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 104.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 103.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 102.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 102.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 101.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 101.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 101.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 100.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 100.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 97.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 97.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 97.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 96.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 96.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 96.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 95.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 95.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 94.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 94.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 93.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 92.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 92.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 91.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 90.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 90.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 90.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 90.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 88.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 88.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 88.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 88.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 87.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 87.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 86.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 86.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 85.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 85.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 85.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 84.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 84.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 83.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 83.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 83.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 83.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 83.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 82.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 82.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 82.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 82.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 81.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 80.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 79.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 78.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 78.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 78.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 77.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 77.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 77.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 77.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 76.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 75.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 74.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 74.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 73.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 71.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 71.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 71.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 70.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 69.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 69.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 69.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 68.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 68.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 68.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 66.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 65.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 64.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 64.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 63.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 60.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 57.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 57.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 55.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 50.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 49.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 47.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 47.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 109.7
FF:10151-102I7 76 years, female 109.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.1
Pig sample Sample description nTPM
Amygdala
nTPM: 97.2
Samples: 4

Max nTPM: 128.4
Min nTPM: 82.0
Sample A Female 128.4
Sample B Female 93.5
Sample C Male 82.0
Sample D Male 84.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 238.9
Samples: 4

Max nTPM: 244.1
Min nTPM: 235.1
Sample A Male 235.1
Sample B Male 235.3
Sample C Female 240.9
Sample D Female 244.1

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