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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:77.0 nTPM
HPA Brain:113.6 nTPM
GTEx:77.0 nTPM
FANTOM5:113.3 Scaled Tags Per Million
Pig:181.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 98.7
1981 Female, age 72, midline 129.5
2048 Male, age 55, midline 108.7
2565 Male, age 75, midline 94.6
2816 Male, age 47, midline 86.5
2194 Female, age 79, both hemispheres 74.3
Cervical spinal cord, dorsal horn
nTPM: 99.3
2173 Female, age 72, unknown 118.6
2069 Male, age 47, both hemispheres 104.0
2297 Male, age 75, both hemispheres 99.5
2721 Male, age 90, both hemispheres 94.7
2296 Male, age 66, both hemispheres 94.0
1877 Male, age 55, unknown 84.7
Cervical spinal cord, ventral horn
nTPM: 113.6
2098 Female, age 72, unknown 157.1
2809 Male, age 90, both hemispheres 152.6
2295 Male, age 66, both hemispheres 118.0
2480 Male, age 75, both hemispheres 105.9
2068 Male, age 55, unknown 81.5
2820 Female, age 79, both hemispheres 66.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 77.0
Samples: 159

Max nTPM: 171.7
Min nTPM: 39.4
Std nTPM: 21.6
Median nTPM: 73.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 171.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 149.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 137.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 132.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 130.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 126.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 125.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 117.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 109.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 109.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 108.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 108.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 107.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 106.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 105.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 102.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 102.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 101.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 101.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 101.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 101.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 100.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 99.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 98.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 96.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 96.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 96.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 95.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 95.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 95.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 92.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 92.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 92.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 91.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 91.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 90.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 89.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 89.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 88.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 87.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 87.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 86.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 86.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 85.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 85.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 84.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 84.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 84.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 84.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 84.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 83.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 83.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 83.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 81.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 81.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 81.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 81.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 80.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 80.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 79.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 79.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 79.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 78.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 77.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 77.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 77.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 76.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 76.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 76.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 76.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 75.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 75.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 74.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 74.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 73.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 73.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 73.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 73.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 73.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 72.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 71.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 71.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 70.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 70.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 69.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 68.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 68.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 68.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 68.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 67.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 67.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 67.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 67.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 67.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 66.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 66.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 65.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 65.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 65.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 65.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 65.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 64.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 64.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 64.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 64.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 64.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 64.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 64.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 63.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 63.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 63.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 63.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 63.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 62.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 62.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 62.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 61.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 61.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 60.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 59.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 59.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 59.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 58.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 58.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 58.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 58.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 58.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 58.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 56.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 56.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 55.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 55.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 55.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 55.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 54.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 54.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 53.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 53.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 53.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 52.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 52.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 52.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 51.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 51.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 48.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 48.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 48.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 45.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 41.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 41.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 40.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 39.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 113.3
FF:10159-103A6 76 years, female 124.0
FF:10181-103D1 60 years, female 102.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 181.7
Samples: 4

Max nTPM: 292.4
Min nTPM: 125.2
Sample A Female 125.2
Sample B Female 156.5
Sample C Male 292.4
Sample D Male 152.5
Ventral spinal cord
nTPM: 140.8
Samples: 4

Max nTPM: 181.9
Min nTPM: 117.4
Sample A Female 117.4
Sample B Female 132.7
Sample C Male 181.9
Sample D Male 131.1

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