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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.6 nTPM
HPA Brain:76.5 nTPM
GTEx:151.6 nTPM
FANTOM5:195.8 Scaled Tags Per Million
Pig:124.3 nTPM
Mouse:137.9 nTPM
Allen mouse:9.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.5
Sample id Sample description nTPM
Amygdala
nTPM: 76.5
2814 Male, age 76, right hemisphere 97.6
2695 Female, age 67, right hemisphere 84.7
2514 Male, age 75, right hemisphere 80.3
2517 Female, age 94, left hemisphere 62.4
1987 Female, age 91, left hemisphere 57.3
Basal amygdala
nTPM: 60.6
2827 Female, age 67, right hemisphere 68.5
2609 Male, age 75, right hemisphere 67.6
1955 Male, age 76, both hemispheres 60.8
2685 Female, age 94, left hemisphere 60.8
2110 Male, age 80, left hemisphere 59.6
2243 Female, age 91, right hemisphere 46.3
Central amygdala
nTPM: 67.0
2826 Female, age 94, left hemisphere 82.2
1905 Male, age 76, both hemispheres 73.3
2515 Male, age 75, right hemisphere 63.9
2701 Female, age 91, right hemisphere 58.4
2239 Male, age 80, left hemisphere 57.2
Corticomedial amygdala
nTPM: 51.1
2428 Male, age 75, right hemisphere 65.8
2829 Male, age 80, left hemisphere 51.3
2535 Female, age 67, right hemisphere 49.8
2429 Female, age 94, left hemisphere 49.2
2240 Male, age 76, both hemispheres 45.3
2242 Female, age 91, right hemisphere 45.1
Lateral amygdala
nTPM: 74.3
2830 Female, age 67, right hemisphere 90.6
1883 Male, age 76, both hemispheres 86.7
2516 Male, age 75, right hemisphere 79.1
2256 Male, age 80, left hemisphere 67.5
2534 Female, age 94, left hemisphere 67.4
2255 Female, age 91, right hemisphere 54.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 151.6
Samples: 152

Max nTPM: 356.1
Min nTPM: 26.1
Std nTPM: 51.3
Median nTPM: 138.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 356.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 331.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 294.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 274.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 272.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 262.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 255.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 245.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 238.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 235.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 234.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 230.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 224.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 221.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 218.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 216.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 216.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 214.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 212.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 211.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 209.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 208.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 206.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 206.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 202.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 200.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 197.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 196.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 190.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 188.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 188.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 187.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 187.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 183.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 182.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 180.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 179.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 178.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 178.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 177.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 175.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 174.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 173.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 173.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 170.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 170.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 170.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 169.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 168.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 167.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 165.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 165.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 165.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 164.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 163.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 161.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 161.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 157.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 157.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 155.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 154.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 153.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 152.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 151.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 148.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 147.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 144.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 144.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 143.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 143.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 142.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 141.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 140.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 139.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 139.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 137.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 137.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 136.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 136.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 135.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 135.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 134.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 134.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 134.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 133.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 133.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 133.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 132.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 131.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 131.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 129.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 128.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 127.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 126.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 125.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 124.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 124.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 123.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 122.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 121.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 121.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 120.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 118.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 117.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 117.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 116.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 115.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 114.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 113.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 112.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 112.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 112.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 111.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 110.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 110.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 109.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 107.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 106.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 106.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 105.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 105.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 104.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 104.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 103.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 98.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 98.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 98.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 97.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 93.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 90.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 87.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 87.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 86.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 86.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 86.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 85.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 82.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 75.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 195.8
FF:10151-102I7 76 years, female 195.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.3
Pig sample Sample description nTPM
Amygdala
nTPM: 124.3
Samples: 4

Max nTPM: 149.3
Min nTPM: 99.6
Sample A Female 149.3
Sample B Female 123.9
Sample C Male 124.3
Sample D Male 99.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 138.0
Samples: 4

Max nTPM: 173.8
Min nTPM: 123.1
Sample A Male 125.2
Sample B Male 123.1
Sample C Female 173.8
Sample D Female 129.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.8
75651224 Antisense, RP_060518_01_D02, Mouse strain C57BL/6J (56 days, male) 10.6
74990520 Antisense, RP_060410_01_C02, Mouse strain C57BL/6J (56 days, male) 9.0

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