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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:453.4 nTPM
HPA Brain:119.4 nTPM
GTEx:453.4 nTPM
FANTOM5:342.3 Scaled Tags Per Million
Pig:388.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 103.4
1981 Female, age 72, midline 126.8
2816 Male, age 47, midline 108.7
2194 Female, age 79, both hemispheres 104.5
2048 Male, age 55, midline 90.8
2565 Male, age 75, midline 86.0
Cervical spinal cord, dorsal horn
nTPM: 115.7
2296 Male, age 66, both hemispheres 205.6
2173 Female, age 72, unknown 165.4
2069 Male, age 47, both hemispheres 105.1
1877 Male, age 55, unknown 96.7
2721 Male, age 90, both hemispheres 63.6
2297 Male, age 75, both hemispheres 57.6
Cervical spinal cord, ventral horn
nTPM: 119.4
2098 Female, age 72, unknown 136.0
2820 Female, age 79, both hemispheres 123.7
2068 Male, age 55, unknown 120.7
2480 Male, age 75, both hemispheres 118.1
2809 Male, age 90, both hemispheres 113.3
2295 Male, age 66, both hemispheres 104.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

453.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 453.4
Samples: 159

Max nTPM: 815.7
Min nTPM: 130.2
Std nTPM: 147.3
Median nTPM: 451.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 815.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 812.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 770.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 747.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 741.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 739.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 734.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 731.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 727.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 719.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 708.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 700.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 691.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 666.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 654.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 639.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 624.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 621.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 620.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 618.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 614.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 604.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 602.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 601.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 598.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 592.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 586.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 585.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 582.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 578.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 575.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 569.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 562.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 562.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 562.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 561.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 560.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 553.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 552.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 550.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 549.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 549.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 548.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 547.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 545.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 544.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 543.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 542.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 540.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 536.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 534.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 532.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 529.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 528.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 524.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 523.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 518.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 517.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 515.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 510.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 506.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 505.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 504.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 502.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 500.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 498.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 488.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 486.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 478.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 475.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 463.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 460.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 458.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 456.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 456.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 454.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 453.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 453.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 453.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 451.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 441.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 436.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 435.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 430.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 428.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 427.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 425.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 425.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 425.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 425.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 418.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 416.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 413.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 412.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 408.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 407.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 407.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 404.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 404.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 404.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 402.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 401.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 401.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 401.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 400.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 399.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 392.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 392.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 388.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 385.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 380.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 375.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 365.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 362.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 357.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 352.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 352.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 352.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 350.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 347.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 344.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 341.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 337.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 335.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 334.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 326.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 324.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 313.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 311.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 309.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 306.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 305.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 295.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 289.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 278.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 277.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 277.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 277.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 275.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 273.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 272.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 265.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 264.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 263.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 254.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 244.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 238.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 234.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 227.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 217.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 216.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 210.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 205.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 195.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 183.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 182.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 180.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 179.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

342.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 342.3
FF:10181-103D1 60 years, female 376.0
FF:10159-103A6 76 years, female 308.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 324.3
Samples: 4

Max nTPM: 355.7
Min nTPM: 305.7
Sample A Female 318.5
Sample B Female 305.7
Sample C Male 355.7
Sample D Male 317.2
Ventral spinal cord
nTPM: 388.6
Samples: 4

Max nTPM: 418.5
Min nTPM: 366.6
Sample A Female 389.0
Sample B Female 366.6
Sample C Male 380.4
Sample D Male 418.5

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