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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:165.5 nTPM
HPA Brain:321.0 nTPM
GTEx:165.5 nTPM
FANTOM5:371.8 Scaled Tags Per Million
Pig:203.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 234.2
2194 Female, age 79, both hemispheres 253.3
2565 Male, age 75, midline 242.1
2048 Male, age 55, midline 232.5
2816 Male, age 47, midline 231.8
1981 Female, age 72, midline 211.1
Cervical spinal cord, dorsal horn
nTPM: 223.1
2173 Female, age 72, unknown 279.9
2296 Male, age 66, both hemispheres 260.1
1877 Male, age 55, unknown 237.3
2069 Male, age 47, both hemispheres 216.7
2721 Male, age 90, both hemispheres 176.4
2297 Male, age 75, both hemispheres 168.0
Cervical spinal cord, ventral horn
nTPM: 321.0
2480 Male, age 75, both hemispheres 383.4
2809 Male, age 90, both hemispheres 371.7
2295 Male, age 66, both hemispheres 341.8
2068 Male, age 55, unknown 310.8
2820 Female, age 79, both hemispheres 305.3
2098 Female, age 72, unknown 212.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 165.5
Samples: 159

Max nTPM: 437.5
Min nTPM: 56.5
Std nTPM: 63.3
Median nTPM: 158.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 437.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 415.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 394.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 333.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 330.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 324.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 307.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 307.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 304.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 251.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 248.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 244.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 236.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 236.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 231.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 231.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 230.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 230.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 227.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 218.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 218.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 216.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 214.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 211.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 211.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 210.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 208.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 207.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 206.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 206.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 205.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 203.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 203.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 202.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 202.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 201.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 199.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 199.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 199.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 198.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 197.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 193.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 190.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 189.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 188.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 185.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 182.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 180.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 180.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 179.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 179.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 178.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 176.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 175.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 175.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 174.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 173.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 171.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 171.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 170.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 170.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 169.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 169.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 168.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 168.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 167.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 167.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 166.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 164.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 164.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 163.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 162.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 162.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 162.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 162.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 162.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 160.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 158.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 158.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 157.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 156.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 156.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 156.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 155.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 155.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 154.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 151.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 151.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 150.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 150.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 149.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 147.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 146.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 146.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 145.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 143.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 142.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 142.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 140.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 139.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 138.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 137.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 136.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 136.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 136.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 135.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 135.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 135.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 134.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 134.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 134.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 133.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 133.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 132.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 131.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 130.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 129.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 127.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 127.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 126.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 125.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 124.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 122.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 122.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 120.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 120.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 118.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 117.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 116.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 116.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 116.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 116.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 114.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 109.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 109.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 109.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 109.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 106.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 101.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 101.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 100.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 95.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 93.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 93.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 91.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 91.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 89.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 88.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 79.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 77.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 76.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 75.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 67.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 66.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 66.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 63.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 63.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 56.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

371.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 371.8
FF:10181-103D1 60 years, female 491.5
FF:10159-103A6 76 years, female 252.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 178.2
Samples: 4

Max nTPM: 194.7
Min nTPM: 159.4
Sample A Female 159.4
Sample B Female 194.7
Sample C Male 164.9
Sample D Male 193.6
Ventral spinal cord
nTPM: 203.9
Samples: 4

Max nTPM: 238.6
Min nTPM: 183.9
Sample A Female 190.1
Sample B Female 203.0
Sample C Male 183.9
Sample D Male 238.6

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