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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3188.8 nTPM
HPA Brain:577.7 nTPM
GTEx:3188.8 nTPM
FANTOM5:85.5 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

577.7
Sample id Sample description nTPM
Amygdala
nTPM: 577.7
2695 Female, age 67, right hemisphere 790.1
2517 Female, age 94, left hemisphere 576.0
2514 Male, age 75, right hemisphere 545.6
2814 Male, age 76, right hemisphere 543.6
1987 Female, age 91, left hemisphere 433.4
Basal amygdala
nTPM: 461.3
2827 Female, age 67, right hemisphere 653.7
2609 Male, age 75, right hemisphere 465.1
2685 Female, age 94, left hemisphere 450.2
2110 Male, age 80, left hemisphere 449.6
1955 Male, age 76, both hemispheres 403.3
2243 Female, age 91, right hemisphere 345.6
Central amygdala
nTPM: 496.4
2826 Female, age 94, left hemisphere 744.5
2515 Male, age 75, right hemisphere 502.8
1905 Male, age 76, both hemispheres 466.7
2239 Male, age 80, left hemisphere 403.0
2701 Female, age 91, right hemisphere 365.0
Corticomedial amygdala
nTPM: 446.3
2429 Female, age 94, left hemisphere 554.4
2829 Male, age 80, left hemisphere 485.7
2535 Female, age 67, right hemisphere 472.9
2428 Male, age 75, right hemisphere 462.1
2242 Female, age 91, right hemisphere 357.0
2240 Male, age 76, both hemispheres 345.6
Lateral amygdala
nTPM: 525.1
2830 Female, age 67, right hemisphere 802.8
2516 Male, age 75, right hemisphere 625.6
2534 Female, age 94, left hemisphere 588.6
1883 Male, age 76, both hemispheres 422.5
2256 Male, age 80, left hemisphere 392.3
2255 Female, age 91, right hemisphere 318.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3188.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 3188.8
Samples: 152

Max nTPM: 10907.6
Min nTPM: 1605.0
Std nTPM: 1340.6
Median nTPM: 2895.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10907.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 9408.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 7779.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7314.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 6763.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 6001.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 5970.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 5628.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5204.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4856.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 4840.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4815.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 4813.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4655.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 4564.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 4537.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4431.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 4217.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 4165.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 4136.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 4131.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4113.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 4108.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 4042.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4001.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 3949.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 3925.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3919.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3919.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3872.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 3848.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 3808.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3734.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3732.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 3703.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 3699.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3685.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 3638.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3628.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3591.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 3569.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3542.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3517.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 3486.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 3479.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3455.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3442.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 3417.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3409.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 3395.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3354.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 3339.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 3275.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3252.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3240.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 3240.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 3233.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3231.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 3225.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 3218.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3199.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3179.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 3176.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 3165.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3154.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3152.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3112.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3069.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3063.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3055.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3054.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 3016.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2991.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2959.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2926.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2897.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2894.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2878.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2849.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2844.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2843.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2808.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 2804.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2803.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2784.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2778.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2723.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2691.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2689.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2685.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2675.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2675.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2637.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2621.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2611.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2608.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2601.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2566.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2561.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2561.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2553.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2506.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2497.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2479.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2478.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2442.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2413.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2388.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2363.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2353.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2350.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2345.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2326.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 2324.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2323.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2319.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2318.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2284.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2260.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2232.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2224.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2224.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2215.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2186.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2171.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2169.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2168.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2157.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2155.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2151.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2124.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2115.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2089.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2049.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2014.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2013.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1961.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1958.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1930.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1918.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1885.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1883.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1874.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1841.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1820.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1797.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1789.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1744.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1741.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1702.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1689.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1605.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 85.5
FF:10151-102I7 76 years, female 85.5

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