MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.4 nTPM
HPA Brain:77.1 nTPM
GTEx:85.4 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:50.6 nTPM
Allen mouse:16.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.2
2019 Male, age 18, unknown 90.3
2828 Female, age 72, unknown 78.6
2586 Male, age 75, left hemisphere 67.3
1870 Female, age 42, unknown 66.3
1827 Male, age 72, unknown 60.5
2411 Female, age 72, unknown 57.7
1833 Male, age 53, unknown 54.9
2666 Male, age 74, left hemisphere 54.2
1830 Male, age 51, unknown 51.6
2219 Male, age 76, both hemispheres 50.6
Dorsal raphe nucleus
nTPM: 69.1
1828 Male, age 53, unknown 82.8
2016 Female, age 72, unknown 74.1
2047 Male, age 72, unknown 74.1
2298 Female, age 72, unknown 60.3
2750 Male, age 76, both hemispheres 54.2
Inferior colliculus
nTPM: 58.7
1890 Male, age 53, unknown 66.4
2097 Female, age 72, unknown 61.4
1848 Female, age 42, unknown 58.7
2849 Male, age 72, unknown 48.5
Median raphe nucleus
nTPM: 48.4
2220 Male, age 76, midline 48.4
Periaquaductal grey, anterior
nTPM: 61.1
1795 Male, age 51, unknown 66.5
1947 Male, age 18, unknown 62.9
2502 Female, age 75, unknown 53.9
Periaquaductal grey, dorsal
nTPM: 60.5
2850 Male, age 76, both hemispheres 73.4
2464 Female, age 72, unknown 58.3
1831 Male, age 72, unknown 58.0
1840 Male, age 53, unknown 52.3
Periaquaductal grey, lateral
nTPM: 65.7
2272 Male, age 74, both hemispheres 76.4
2140 Male, age 76, both hemispheres 67.8
2053 Male, age 18, unknown 53.0
Pretectal area
nTPM: 69.5
2667 Female, age 75, unknown 84.9
2273 Male, age 74, both hemispheres 79.6
1944 Female, age 72, unknown 77.5
1817 Female, age 42, unknown 77.1
1816 Male, age 51, unknown 74.4
2007 Male, age 72, unknown 71.8
1815 Male, age 53, unknown 69.4
2407 Male, age 75, both hemispheres 67.8
2224 Female, age 72, unknown 56.9
2316 Male, age 76, right hemisphere 55.9
2825 Male, age 18, unknown 49.5
Red nucleus
nTPM: 74.4
2725 Female, age 75, unknown 89.0
2785 Male, age 18, unknown 83.6
1954 Female, age 42, unknown 80.7
2588 Male, age 74, left hemisphere 79.0
1821 Female, age 72, unknown 77.9
1865 Male, age 51, unknown 75.2
1904 Male, age 53, unknown 72.7
2769 Male, age 72, unknown 71.7
2503 Female, age 72, unknown 71.5
2227 Male, age 72, unknown 71.0
2823 Male, age 76, right hemisphere 70.7
2584 Male, age 75, left hemisphere 49.3
Substantia nigra
nTPM: 77.1
1916 Female, age 42, unknown 113.4
1851 Male, age 51, unknown 98.2
2409 Female, age 72, unknown 83.9
2699 Male, age 18, unknown 78.2
2241 Male, age 72, unknown 76.2
1941 Male, age 53, unknown 73.5
2665 Male, age 74, both hemispheres 64.7
2590 Female, age 75, unknown 64.6
1889 Female, age 72, unknown 64.0
2583 Male, age 75, right hemisphere 54.5
Superior colliculus
nTPM: 62.2
1995 Male, age 72, unknown 73.6
2087 Female, age 72, unknown 73.5
1913 Female, age 42, unknown 68.2
2664 Male, age 75, both hemispheres 66.3
1796 Male, age 53, unknown 61.1
2261 Male, age 18, unknown 59.3
2587 Male, age 74, left hemisphere 57.3
1895 Male, age 76, right hemisphere 56.1
2668 Female, age 75, unknown 54.5
1839 Male, age 51, unknown 52.0
Ventral tegmental area
nTPM: 66.5
1915 Female, age 42, unknown 87.7
2410 Female, age 72, unknown 69.5
2021 Male, age 53, unknown 64.4
2218 Male, age 76, both hemispheres 61.0
1942 Male, age 51, unknown 59.8
2223 Female, age 72, unknown 56.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.4
Samples: 139

Max nTPM: 176.5
Min nTPM: 30.0
Std nTPM: 22.8
Median nTPM: 82.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 176.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 162.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 148.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 144.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 131.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 126.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 124.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 124.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 121.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 121.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 120.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.7
Samples: 4

Max nTPM: 41.7
Min nTPM: 29.0
Sample A Female 41.7
Sample B Female 29.0
Sample C Male 38.3
Sample D Male 33.6
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 41.1
Min nTPM: 25.2
Sample A Female 41.1
Sample B Female 30.2
Sample C Male 30.8
Sample D Male 25.2
Periaqueductal gray
nTPM: 25.8
Samples: 3

Max nTPM: 28.3
Min nTPM: 21.1
Sample B Female 27.9
Sample C Male 28.3
Sample D Male 21.1
Superior colliculi
nTPM: 33.9
Samples: 4

Max nTPM: 40.3
Min nTPM: 27.6
Sample A Female 35.1
Sample B Female 40.3
Sample C Male 32.7
Sample D Male 27.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 53.6
Min nTPM: 46.6
Sample A Male 53.6
Sample B Male 49.4
Sample C Female 46.6
Sample D Female 52.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.6
227161 Antisense, RP_040604_02_A03, Mouse strain C57BL/6J (56 days, male) 28.0
68203485 Antisense, RP_041208_01_C05, Mouse strain C57BL/6J (56 days, male) 5.3

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