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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
80.8
nTPM
HPA Brain:
86.4
nTPM
GTEx:
80.8
nTPM
Pig:
315.7
nTPM
Mouse:
668.6
nTPM
Allen mouse:
29.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003154
Antibody CAB009324
Glial cells
Not detected
Not detected
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 48.3
1898
Male, age 80, left hemisphere
90.5
2621
Female, age 67, right hemisphere
62.7
2148
Female, age 91, left hemisphere
46.7
1855
Male, age 76, left hemisphere
36.8
1911
Female, age 85, right hemisphere
28.3
2529
Female, age 94, left hemisphere
24.8
Dentate gyrus nTPM: 55.7
1927
Female, age 91, both hemispheres
107.8
2010
Male, age 76, both hemispheres
58.0
2246
Female, age 85, both hemispheres
47.1
2530
Female, age 94, left hemisphere
46.9
2531
Female, age 67, both hemispheres
38.5
2528
Male, age 74, both hemispheres
36.0
Entorhinal gyrus nTPM: 38.8
2764
Male, age 80, right hemisphere
53.6
1938
Female, age 85, left hemisphere
50.8
2613
Female, age 94, left hemisphere
48.3
1787
Male, age 76, left hemisphere
39.9
2117
Female, age 91, right hemisphere
21.0
2686
Male, age 75, right hemisphere
19.1
Hippocampus, CA1 nTPM: 68.5
2749
Male, age 80, left hemisphere
134.4
1873
Female, age 85, both hemispheres
68.9
2527
Male, age 74, both hemispheres
62.8
2082
Female, age 91, right hemisphere
40.7
2045
Male, age 76, both hemispheres
35.4
Hippocampus, CA2 nTPM: 55.6
1892
Male, age 76, both hemispheres
92.4
1963
Male, age 80, left hemisphere
91.2
2249
Male, age 74, both hemispheres
47.1
1940
Female, age 85, left hemisphere
44.1
2113
Female, age 91, right hemisphere
36.0
2437
Female, age 94, left hemisphere
22.6
Hippocampus, CA3 nTPM: 48.4
2137
Male, age 80, left hemisphere
92.3
1867
Male, age 76, both hemispheres
53.8
2620
Female, age 94, left hemisphere
38.8
2436
Male, age 74, both hemispheres
35.8
2861
Female, age 67, both hemispheres
34.9
1891
Female, age 85, both hemispheres
34.7
Parahippocampal cortex nTPM: 49.9
1850
Male, age 80, both hemispheres
75.4
2245
Female, age 91, both hemispheres
75.4
1990
Female, age 91, right hemisphere
73.1
2250
Female, age 67, right hemisphere
59.6
1933
Female, age 85, both hemispheres
52.2
2532
Female, age 72, left hemisphere
41.1
2018
Male, age 76, both hemispheres
39.5
2693
Female, age 94, both hemispheres
32.7
2622
Female, age 67, right hemisphere
27.5
2692
Male, age 74, both hemispheres
22.9
Perirhinal gyrus nTPM: 86.4
1847
Female, age 91, left hemisphere
144.1
2521
Female, age 94, right hemisphere
109.5
1794
Male, age 80, right hemisphere
79.3
1841
Female, age 85, right hemisphere
61.7
2848
Male, age 76, right hemisphere
37.4
Subiculum nTPM: 37.0
1901
Male, age 80, both hemispheres
58.2
1977
Female, age 85, both hemispheres
52.0
2438
Female, age 94, left hemisphere
35.3
2619
Male, age 74, both hemispheres
29.7
2042
Male, age 76, both hemispheres
26.8
2729
Female, age 91, right hemisphere
20.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 80.8
Samples: 197
Max nTPM: 351.9
Min nTPM: 10.5
Std nTPM: 63.4
Median nTPM: 64.6
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
668.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 534.9
Samples: 4
Max nTPM: 652.4
Min nTPM: 467.8
Sample A
Male
468.2
Sample B
Male
467.8
Sample C
Female
551.0
Sample D
Female
652.4
Hippocampal formation nTPM: 668.6
Samples: 4
Max nTPM: 748.8
Min nTPM: 602.5
Sample A
Male
608.8
Sample B
Male
714.2
Sample C
Female
748.8
Sample D
Female
602.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
