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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:49.7 nTPM
Pig:285.5 nTPM
Mouse:409.3 nTPM
Allen mouse:31.8 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 26.2
2032 Female, age 42, unknown 33.8
2497 Male, age 66, unknown 25.0
2396 Male, age 61, right hemisphere 19.9
Centromedial thalamic nucleus
nTPM: 24.8
2401 Male, age 76, right hemisphere 48.1
2279 Female, age 85, left hemisphere 1.6
Habenula
nTPM: 49.7
2203 Male, age 61, left hemisphere 73.1
1957 Male, age 80, both hemispheres 67.2
2276 Male, age 66, unknown 31.1
2252 Male, age 62, unknown 27.3
Lateral geniculate body
nTPM: 45.2
2106 Female, age 67, right hemisphere 124.0
1953 Male, age 62, unknown 66.4
2399 Male, age 61, left hemisphere 49.3
2035 Female, age 72, unknown 44.9
2857 Male, age 74, right hemisphere 30.8
2841 Male, age 80, both hemispheres 22.2
2659 Male, age 66, unknown 16.1
2575 Female, age 94, right hemisphere 7.5
Lateral thalamic nuclei
nTPM: 28.3
2765 Female, age 67, both hemispheres 44.0
1903 Male, age 76, left hemisphere 35.1
2577 Male, age 74, both hemispheres 34.3
2573 Female, age 94, left hemisphere 15.1
2661 Female, age 72, unknown 12.8
Medial dorsal thalamic nucleus
nTPM: 40.1
2498 Male, age 66, unknown 100.4
1971 Male, age 61, right hemisphere 62.2
1859 Male, age 76, both hemispheres 47.6
2283 Male, age 80, right hemisphere 45.6
2026 Male, age 62, unknown 45.1
1810 Male, age 48, unknown 38.1
2402 Female, age 67, both hemispheres 30.1
2492 Male, age 75, right hemisphere 30.0
1930 Female, age 42, unknown 29.7
2572 Female, age 94, right hemisphere 27.6
2039 Female, age 72, unknown 27.2
2576 Male, age 74, both hemispheres 23.5
2660 Female, age 72, unknown 14.3
Medial geniculate body
nTPM: 28.4
1811 Female, age 42, unknown 48.6
2207 Male, age 80, right hemisphere 29.3
2571 Male, age 75, right hemisphere 27.7
2657 Male, age 74, right hemisphere 26.5
2650 Female, age 94, left hemisphere 22.8
2217 Female, age 72, unknown 22.1
2049 Male, age 76, both hemispheres 21.5
Nucleus reuniens
nTPM: 33.0
2212 Female, age 67, left hemisphere 69.2
2205 Male, age 80, left hemisphere 24.9
2210 Female, age 85, left hemisphere 5.1
Nucleus rhomboideus
nTPM: 20.2
2206 Male, age 80, both hemispheres 48.8
2213 Female, age 67, left hemisphere 6.3
2280 Female, age 85, left hemisphere 5.4
Posterior thalamic nucleus
nTPM: 32.8
2266 Male, age 76, right hemisphere 41.1
2495 Female, age 67, right hemisphere 38.5
2649 Female, age 94, both hemispheres 31.9
2655 Male, age 74, right hemisphere 19.6
Pulvinar
nTPM: 38.4
1972 Male, age 62, unknown 64.2
2496 Female, age 67, right hemisphere 51.9
2398 Male, age 61, left hemisphere 45.8
1932 Male, age 80, right hemisphere 44.1
2214 Male, age 76, right hemisphere 40.7
1929 Male, age 48, unknown 34.5
1899 Female, age 42, unknown 34.2
2499 Male, age 66, unknown 24.9
2724 Male, age 74, right hemisphere 24.0
2582 Female, age 72, unknown 20.0
Subthalamic nucleus
nTPM: 30.3
2658 Male, age 74, both hemispheres 46.5
2124 Male, age 62, unknown 34.7
2275 Male, age 66, unknown 33.4
2406 Female, age 72, unknown 33.4
2282 Male, age 61, both hemispheres 32.2
2779 Female, age 42, unknown 27.0
2056 Female, age 72, unknown 19.0
2216 Male, age 48, unknown 16.3
Ventral posterolateral thalamic nucleus
nTPM: 30.5
2740 Male, age 76, right hemisphere 55.5
2197 Male, age 80, both hemispheres 40.7
2397 Male, age 61, right hemisphere 36.4
2578 Male, age 74, both hemispheres 26.5
2570 Male, age 75, right hemisphere 15.4
2581 Female, age 72, unknown 8.6
Ventral posteromedial thalamic nucleus
nTPM: 32.1
2202 Male, age 61, left hemisphere 59.7
2758 Male, age 80, both hemispheres 37.1
2653 Male, age 74, both hemispheres 29.7
2127 Male, age 76, right hemisphere 21.3
2281 Male, age 75, right hemisphere 12.9
Ventral thalamic nuclei
nTPM: 27.6
1860 Male, age 76, both hemispheres 45.5
1845 Male, age 48, unknown 44.4
2285 Male, age 62, unknown 33.7
1912 Female, age 42, unknown 33.4
2204 Male, age 80, both hemispheres 22.1
2291 Female, age 72, unknown 20.9
2652 Male, age 74, left hemisphere 17.3
2580 Male, age 66, unknown 16.7
2858 Female, age 72, unknown 14.5
Zona incerta
nTPM: 19.4
2208 Male, age 80, right hemisphere 25.8
2822 Male, age 74, right hemisphere 23.3
2215 Male, age 66, unknown 22.0
2403 Male, age 62, unknown 16.4
2663 Female, age 72, unknown 9.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.5
Pig sample Sample description nTPM
Thalamus
nTPM: 285.5
Samples: 4

Max nTPM: 347.5
Min nTPM: 150.6
Sample A Female 331.3
Sample B Female 312.7
Sample C Male 347.5
Sample D Male 150.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

409.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 409.3
Samples: 4

Max nTPM: 473.4
Min nTPM: 344.7
Sample A Male 344.7
Sample B Male 473.4
Sample C Female 371.1
Sample D Female 448.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 31.8
356092 Antisense, RP_040617_02_C08, Mouse strain C57BL/6J (56 days, male) 31.8
294021 Antisense, RP_040617_02_C08, Mouse strain C57BL/6J (56 days, male) 25.7

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