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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:83.5 nTPM
HPA Brain:117.0 nTPM
GTEx:83.5 nTPM
FANTOM5:78.8 Scaled Tags Per Million
Pig:64.5 nTPM
Mouse:107.0 nTPM
Allen mouse:4.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.0
Sample id Sample description nTPM
Amygdala
nTPM: 90.6
2814 Male, age 76, right hemisphere 150.7
2695 Female, age 67, right hemisphere 102.7
2517 Female, age 94, left hemisphere 78.0
2514 Male, age 75, right hemisphere 72.0
1987 Female, age 91, left hemisphere 49.4
Basal amygdala
nTPM: 92.2
2609 Male, age 75, right hemisphere 121.4
1955 Male, age 76, both hemispheres 115.6
2827 Female, age 67, right hemisphere 96.9
2110 Male, age 80, left hemisphere 76.3
2685 Female, age 94, left hemisphere 74.0
2243 Female, age 91, right hemisphere 69.1
Central amygdala
nTPM: 98.2
2826 Female, age 94, left hemisphere 140.6
1905 Male, age 76, both hemispheres 134.8
2515 Male, age 75, right hemisphere 89.9
2239 Male, age 80, left hemisphere 80.9
2701 Female, age 91, right hemisphere 44.7
Corticomedial amygdala
nTPM: 75.0
2428 Male, age 75, right hemisphere 109.1
2240 Male, age 76, both hemispheres 85.5
2535 Female, age 67, right hemisphere 74.1
2429 Female, age 94, left hemisphere 70.0
2829 Male, age 80, left hemisphere 64.1
2242 Female, age 91, right hemisphere 47.3
Lateral amygdala
nTPM: 117.0
2534 Female, age 94, left hemisphere 131.1
2830 Female, age 67, right hemisphere 131.1
1883 Male, age 76, both hemispheres 126.1
2516 Male, age 75, right hemisphere 122.2
2256 Male, age 80, left hemisphere 112.7
2255 Female, age 91, right hemisphere 78.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 83.5
Samples: 152

Max nTPM: 157.0
Min nTPM: 22.9
Std nTPM: 24.7
Median nTPM: 82.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 157.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 147.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 142.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 133.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 133.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 131.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 131.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 122.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 121.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 120.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 120.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 120.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 118.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 117.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 114.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 113.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 113.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 111.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 110.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 110.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 109.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 108.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 107.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 107.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 106.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 105.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 105.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 104.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 104.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 103.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 102.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 102.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 102.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 101.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 100.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 99.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 99.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 97.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 97.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 97.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 95.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 94.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 94.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 93.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 92.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 91.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 90.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 89.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 89.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 88.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 88.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 88.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 87.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 87.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 87.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 86.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 86.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 86.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 86.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 86.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 86.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 85.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 83.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 83.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 82.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 82.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 82.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 81.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 80.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 79.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 78.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 78.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 78.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 77.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 76.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 76.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 76.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 76.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 75.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 75.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 75.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 74.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 73.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 72.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 72.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 72.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 72.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 71.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 71.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 71.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 69.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 69.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 69.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 68.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 68.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 66.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 66.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 64.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 64.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 64.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 63.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 63.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 59.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 59.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 58.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 58.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 58.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 57.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 55.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 55.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 54.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 52.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 51.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 51.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 50.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 49.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 48.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 47.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 47.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 45.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 45.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 45.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 43.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 43.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 42.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 38.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 22.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 78.8
FF:10151-102I7 76 years, female 78.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.5
Pig sample Sample description nTPM
Amygdala
nTPM: 64.5
Samples: 4

Max nTPM: 72.3
Min nTPM: 57.8
Sample A Female 72.3
Sample B Female 66.8
Sample C Male 57.8
Sample D Male 61.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 107.0
Samples: 4

Max nTPM: 152.3
Min nTPM: 80.0
Sample A Male 80.0
Sample B Male 104.0
Sample C Female 152.3
Sample D Female 91.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
69015242 Antisense, RP_050310_02_E11, Mouse strain C57BL/6J (56 days, male) 7.0
72129243 Antisense, RP_051017_03_E03, Mouse strain C57BL/6J (56 days, male) 2.4

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