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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:185.3 nTPM
HPA Brain:124.0 nTPM
GTEx:185.3 nTPM
FANTOM5:168.5 Scaled Tags Per Million
Pig:67.6 nTPM
Mouse:39.8 nTPM
Allen mouse:2.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.0
Sample id Sample description nTPM
Amygdala
nTPM: 124.0
2514 Male, age 75, right hemisphere 157.2
1987 Female, age 91, left hemisphere 135.9
2814 Male, age 76, right hemisphere 119.9
2695 Female, age 67, right hemisphere 113.4
2517 Female, age 94, left hemisphere 93.8
Basal amygdala
nTPM: 93.5
2609 Male, age 75, right hemisphere 149.8
1955 Male, age 76, both hemispheres 98.0
2110 Male, age 80, left hemisphere 97.5
2243 Female, age 91, right hemisphere 97.1
2685 Female, age 94, left hemisphere 78.3
2827 Female, age 67, right hemisphere 40.5
Central amygdala
nTPM: 93.3
2515 Male, age 75, right hemisphere 118.4
1905 Male, age 76, both hemispheres 109.1
2701 Female, age 91, right hemisphere 90.5
2239 Male, age 80, left hemisphere 89.8
2826 Female, age 94, left hemisphere 58.7
Corticomedial amygdala
nTPM: 106.7
2428 Male, age 75, right hemisphere 161.6
2829 Male, age 80, left hemisphere 118.2
2242 Female, age 91, right hemisphere 115.0
2429 Female, age 94, left hemisphere 107.2
2240 Male, age 76, both hemispheres 95.3
2535 Female, age 67, right hemisphere 42.9
Lateral amygdala
nTPM: 83.0
2516 Male, age 75, right hemisphere 124.5
1883 Male, age 76, both hemispheres 123.1
2255 Female, age 91, right hemisphere 83.6
2256 Male, age 80, left hemisphere 72.7
2534 Female, age 94, left hemisphere 54.4
2830 Female, age 67, right hemisphere 39.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 185.3
Samples: 152

Max nTPM: 426.8
Min nTPM: 64.5
Std nTPM: 63.2
Median nTPM: 174.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 426.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 406.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 354.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 336.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 329.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 310.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 310.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 293.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 287.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 286.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 283.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 279.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 273.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 266.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 262.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 262.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 260.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 256.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 254.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 249.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 248.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 246.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 242.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 242.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 240.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 236.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 236.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 236.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 235.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 234.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 233.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 231.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 230.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 228.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 227.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 224.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 223.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 223.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 223.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 222.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 221.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 219.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 217.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 216.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 213.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 213.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 213.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 210.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 210.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 210.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 209.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 208.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 206.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 206.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 206.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 203.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 203.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 201.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 199.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 197.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 197.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 195.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 192.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 191.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 190.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 189.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 189.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 189.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 187.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 181.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 181.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 178.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 177.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 177.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 174.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 173.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 173.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 173.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 172.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 172.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 171.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 171.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 169.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 169.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 169.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 168.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 168.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 167.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 165.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 163.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 163.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 162.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 161.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 159.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 158.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 158.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 155.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 154.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 153.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 153.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 153.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 152.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 149.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 147.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 146.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 146.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 145.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 144.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 141.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 140.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 139.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 137.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 136.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 133.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 132.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 131.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 130.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 130.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 130.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 129.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 128.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 127.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 126.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 126.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 123.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 123.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 123.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 122.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 121.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 117.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 114.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 112.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 109.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 107.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 107.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 105.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 103.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 92.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 91.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 89.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 86.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 84.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 83.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 64.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 168.5
FF:10151-102I7 76 years, female 168.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.6
Pig sample Sample description nTPM
Amygdala
nTPM: 67.6
Samples: 4

Max nTPM: 82.5
Min nTPM: 59.0
Sample A Female 82.5
Sample B Female 66.3
Sample C Male 62.7
Sample D Male 59.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 39.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 37.8
Sample A Male 38.7
Sample B Male 37.8
Sample C Female 39.9
Sample D Female 42.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
71991720 Antisense, RP_051012_03_C12, Mouse strain C57BL/6J (56 days, male) 4.0
70795910 Antisense, RP_050712_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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