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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:191.0 nTPM
FANTOM5:220.4 Scaled Tags Per Million
Pig:57.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019004Antibody HPA073666
Glial cells MediumHigh
Neuronal cells LowHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 191.0
Samples: 246

Max nTPM: 382.8
Min nTPM: 77.2
Std nTPM: 48.9
Median nTPM: 182.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 382.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 356.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 327.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 322.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 319.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 309.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 304.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 300.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 298.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 298.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 297.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 296.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 291.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 282.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 281.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 279.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 277.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 276.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 275.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 268.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 262.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 260.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 259.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 259.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 258.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 258.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 256.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 248.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 248.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 242.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 240.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 239.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 238.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 237.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 237.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 237.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 237.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 236.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 236.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 236.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 235.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 233.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 231.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 231.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 229.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 228.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 226.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 226.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 226.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 225.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 224.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 224.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 222.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 222.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 221.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 220.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 218.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 217.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 216.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 216.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 214.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 214.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 214.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 213.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 213.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 212.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 211.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 211.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 211.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 211.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 210.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 209.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 209.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 208.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 208.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 208.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 207.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 207.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 207.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 205.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 205.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 204.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 203.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 203.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 202.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 202.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 202.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 200.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 200.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 200.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 200.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 198.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 197.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 196.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 196.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 196.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 196.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 195.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 195.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 194.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 194.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 194.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 193.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 193.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 192.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 192.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 192.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 192.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 192.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 192.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 191.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 190.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 188.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 188.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 187.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 187.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 186.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 185.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 185.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 184.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 184.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 183.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 182.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 182.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 182.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 182.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 182.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 181.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 181.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 181.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 180.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 180.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 180.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 179.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 179.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 179.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 178.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 178.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 177.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 177.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 176.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 175.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 175.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 175.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 175.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 175.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 175.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 175.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 174.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 174.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 174.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 174.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 173.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 172.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 172.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 172.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 171.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 170.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 169.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 169.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 168.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 168.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 168.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 168.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 167.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 166.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 166.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 166.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 165.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 165.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 165.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 164.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 164.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 163.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 163.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 163.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 163.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 162.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 161.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 161.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 160.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 160.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 159.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 159.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 158.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 158.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 156.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 156.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 155.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 154.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 154.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 153.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 153.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 152.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 152.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 151.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 150.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 150.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 149.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 149.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 148.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 147.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 147.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 145.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 144.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 144.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 144.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 144.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 144.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 143.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 143.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 142.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 141.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 138.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 138.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 138.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 138.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 137.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 137.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 136.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 136.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 135.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 134.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 134.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 134.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 130.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 130.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 129.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 128.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 128.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 128.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 127.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 125.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 125.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 123.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 123.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 122.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 121.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 110.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 110.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 101.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 90.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 84.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 77.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

220.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 220.4
FF:10164-103B2 76 years, female 220.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.6
Pig sample Sample description nTPM
Caudate
nTPM: 57.6
Samples: 4

Max nTPM: 63.0
Min nTPM: 52.1
Sample A Female 60.5
Sample B Female 54.6
Sample C Male 63.0
Sample D Male 52.1

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