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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Medium
Goblet cells: Medium
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:245.1 nTPM
HPA:245.1 nTPM
GTEx:149.7 nTPM
FANTOM5:257.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019004Antibody HPA073666
Endocrine cells -Medium
Enterocytes -Medium
Enterocytes - Microvilli -Medium
Glandular cells Medium-
Goblet cells -Medium
Paneth cells -Not detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.1
overview
Male, age 65
Small intestine sample 232
nTPM: 198.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 379
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 222.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 179.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 149.7
Samples: 187

Max nTPM: 631.9
Min nTPM: 42.7
Std nTPM: 99.7
Median nTPM: 111.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 631.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 498.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 439.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 433.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 414.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 377.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 354.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 344.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 336.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 335.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 332.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 332.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 307.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 306.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 301.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 294.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 286.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 285.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 285.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 284.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 275.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 272.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 272.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 266.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 258.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 251.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 251.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 249.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 245.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 245.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 244.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 239.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 238.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 237.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 235.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 234.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 234.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 233.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 233.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 228.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 227.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 224.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 223.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 220.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 218.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 216.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 215.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 214.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 213.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 203.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 203.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 203.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 197.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 191.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 191.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 188.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 185.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 183.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 181.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 178.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 177.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 171.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 170.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 170.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 169.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 169.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 169.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 167.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 163.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 162.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 158.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 154.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 153.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 153.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 151.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 147.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 145.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 139.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 137.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 136.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 135.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 135.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 134.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 132.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 132.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 131.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 130.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 130.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 121.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 121.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 113.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 111.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 111.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 111.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 106.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 105.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 105.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 105.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 104.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 102.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 100.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 100.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 100.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 98.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 97.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 96.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 96.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 95.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 95.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 95.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 93.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 93.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 91.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 91.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 90.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 89.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 88.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 87.8
GTEX-1192X-2526-SM-59868 50-59 years, male 86.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 86.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 86.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 84.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 84.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 84.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 83.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 82.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 82.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 80.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 80.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 77.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 76.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 76.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 75.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 74.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 73.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 73.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 72.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 72.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 72.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 71.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 71.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 70.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 69.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 69.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 69.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 68.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 66.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 66.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 66.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 66.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 65.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 65.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 65.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 64.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 64.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 63.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 63.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 62.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 62.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 61.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 60.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 60.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 60.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 59.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 59.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 59.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 59.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 58.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 57.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 56.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 56.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 56.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 55.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 55.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 54.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 54.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 54.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 53.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 53.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 52.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 52.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 51.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 48.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 46.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 46.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 43.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 42.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

257.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 257.8
FF:10024-101D6 15,40,85 years, mixed 257.8

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