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  • RAB7A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:168.7 nTPM
HPA Brain:162.1 nTPM
GTEx:168.7 nTPM
FANTOM5:351.8 Scaled Tags Per Million
Pig:210.0 nTPM
Mouse:303.3 nTPM
Allen mouse:21.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.1
Sample id Sample description nTPM
Amygdala
nTPM: 162.1
2814 Male, age 76, right hemisphere 203.0
1987 Female, age 91, left hemisphere 175.0
2514 Male, age 75, right hemisphere 170.5
2695 Female, age 67, right hemisphere 139.0
2517 Female, age 94, left hemisphere 122.9
Basal amygdala
nTPM: 141.6
1955 Male, age 76, both hemispheres 189.3
2243 Female, age 91, right hemisphere 153.4
2110 Male, age 80, left hemisphere 152.5
2609 Male, age 75, right hemisphere 151.3
2685 Female, age 94, left hemisphere 103.1
2827 Female, age 67, right hemisphere 99.7
Central amygdala
nTPM: 136.7
1905 Male, age 76, both hemispheres 161.3
2239 Male, age 80, left hemisphere 145.1
2515 Male, age 75, right hemisphere 145.1
2701 Female, age 91, right hemisphere 137.7
2826 Female, age 94, left hemisphere 94.4
Corticomedial amygdala
nTPM: 151.7
2240 Male, age 76, both hemispheres 180.3
2829 Male, age 80, left hemisphere 164.8
2242 Female, age 91, right hemisphere 156.6
2429 Female, age 94, left hemisphere 147.8
2428 Male, age 75, right hemisphere 145.8
2535 Female, age 67, right hemisphere 114.9
Lateral amygdala
nTPM: 137.3
1883 Male, age 76, both hemispheres 191.8
2256 Male, age 80, left hemisphere 164.4
2516 Male, age 75, right hemisphere 143.9
2255 Female, age 91, right hemisphere 131.4
2534 Female, age 94, left hemisphere 99.8
2830 Female, age 67, right hemisphere 92.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 168.7
Samples: 152

Max nTPM: 261.6
Min nTPM: 112.4
Std nTPM: 25.9
Median nTPM: 167.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 261.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 242.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 240.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 230.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 222.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 220.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 215.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 215.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 209.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 208.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 206.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 205.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 204.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 204.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 202.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 201.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 200.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 200.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 198.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 197.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 196.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 195.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 195.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 194.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 194.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 194.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 193.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 192.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 189.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 188.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 188.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 187.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 187.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 186.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 185.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 184.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 183.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 183.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 182.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 180.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 179.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 179.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 179.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 179.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 179.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 179.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 179.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 178.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 177.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 177.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 177.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 176.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 175.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 175.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 174.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 174.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 174.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 173.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 173.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 172.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 171.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 170.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 170.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 170.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 170.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 169.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 169.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 169.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 169.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 169.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 168.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 168.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 168.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 167.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 167.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 166.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 166.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 165.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 164.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 163.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 163.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 162.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 162.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 162.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 162.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 162.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 162.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 162.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 161.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 160.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 160.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 160.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 160.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 159.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 158.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 158.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 158.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 158.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 158.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 157.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 157.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 156.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 155.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 155.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 155.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 154.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 154.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 154.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 154.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 154.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 153.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 153.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 152.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 151.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 151.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 150.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 150.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 149.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 149.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 148.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 147.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 147.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 146.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 145.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 145.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 144.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 144.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 143.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 143.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 142.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 141.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 140.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 139.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 139.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 139.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 136.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 130.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 129.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 129.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 129.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 128.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 128.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 128.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 127.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 126.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 125.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 115.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 114.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 112.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

351.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 351.8
FF:10151-102I7 76 years, female 351.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.0
Pig sample Sample description nTPM
Amygdala
nTPM: 210.1
Samples: 4

Max nTPM: 279.5
Min nTPM: 180.9
Sample A Female 279.5
Sample B Female 189.9
Sample C Male 189.9
Sample D Male 180.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 303.4
Samples: 4

Max nTPM: 316.4
Min nTPM: 292.6
Sample A Male 304.6
Sample B Male 292.6
Sample C Female 316.4
Sample D Female 299.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.7
532633 Antisense, RP_040810_02_G08, Mouse strain C57BL/6J (56 days, male) 21.7

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