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  • RAB7A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:191.1 nTPM
HPA Brain:195.3 nTPM
GTEx:191.1 nTPM
FANTOM5:401.7 Scaled Tags Per Million
Pig:403.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 165.1
2048 Male, age 55, midline 192.8
1981 Female, age 72, midline 188.3
2816 Male, age 47, midline 150.4
2194 Female, age 79, both hemispheres 147.2
2565 Male, age 75, midline 147.0
Cervical spinal cord, dorsal horn
nTPM: 195.3
2296 Male, age 66, both hemispheres 236.9
2721 Male, age 90, both hemispheres 208.8
2173 Female, age 72, unknown 193.3
2069 Male, age 47, both hemispheres 184.1
2297 Male, age 75, both hemispheres 184.0
1877 Male, age 55, unknown 164.8
Cervical spinal cord, ventral horn
nTPM: 156.9
2098 Female, age 72, unknown 214.4
2295 Male, age 66, both hemispheres 164.6
2480 Male, age 75, both hemispheres 150.8
2820 Female, age 79, both hemispheres 139.8
2068 Male, age 55, unknown 138.5
2809 Male, age 90, both hemispheres 133.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 191.1
Samples: 159

Max nTPM: 297.1
Min nTPM: 126.8
Std nTPM: 26.3
Median nTPM: 190.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 297.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 260.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 259.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 242.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 236.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 235.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 234.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 233.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 232.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 230.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 228.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 227.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 227.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 227.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 227.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 226.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 224.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 223.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 223.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 222.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 220.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 220.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 219.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 219.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 218.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 218.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 217.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 216.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 214.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 214.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 211.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 211.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 210.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 210.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 210.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 209.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 209.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 208.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 207.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 206.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 206.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 206.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 205.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 203.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 203.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 202.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 202.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 202.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 202.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 200.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 200.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 200.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 199.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 199.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 199.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 199.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 199.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 198.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 197.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 197.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 196.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 196.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 195.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 195.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 195.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 195.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 195.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 194.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 194.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 193.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 193.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 193.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 192.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 192.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 191.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 191.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 191.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 191.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 190.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 190.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 190.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 190.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 190.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 189.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 189.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 189.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 187.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 186.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 186.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 186.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 185.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 185.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 185.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 184.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 184.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 183.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 183.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 182.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 181.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 181.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 181.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 179.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 179.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 178.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 178.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 178.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 178.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 177.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 176.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 176.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 176.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 174.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 173.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 172.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 172.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 172.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 172.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 171.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 170.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 170.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 170.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 170.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 169.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 169.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 169.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 169.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 169.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 168.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 168.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 168.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 168.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 167.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 167.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 165.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 164.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 162.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 162.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 160.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 159.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 156.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 155.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 155.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 153.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 152.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 151.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 151.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 150.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 150.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 150.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 150.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 148.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 147.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 147.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 146.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 144.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 144.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 126.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

401.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 401.7
FF:10159-103A6 76 years, female 428.7
FF:10181-103D1 60 years, female 374.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

403.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 365.9
Samples: 4

Max nTPM: 409.6
Min nTPM: 327.9
Sample A Female 327.9
Sample B Female 366.4
Sample C Male 409.6
Sample D Male 359.8
Ventral spinal cord
nTPM: 403.6
Samples: 4

Max nTPM: 422.9
Min nTPM: 378.4
Sample A Female 398.2
Sample B Female 378.4
Sample C Male 414.8
Sample D Male 422.9

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