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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:68.4 nTPM
HPA Brain:82.9 nTPM
GTEx:68.4 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:108.6 nTPM
Allen mouse:1.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.9
Sample id Sample description nTPM
Amygdala
nTPM: 82.9
2814 Male, age 76, right hemisphere 185.6
2695 Female, age 67, right hemisphere 102.0
2514 Male, age 75, right hemisphere 64.6
2517 Female, age 94, left hemisphere 42.5
1987 Female, age 91, left hemisphere 19.9
Basal amygdala
nTPM: 45.6
1955 Male, age 76, both hemispheres 92.6
2827 Female, age 67, right hemisphere 53.5
2110 Male, age 80, left hemisphere 38.5
2609 Male, age 75, right hemisphere 36.0
2243 Female, age 91, right hemisphere 32.4
2685 Female, age 94, left hemisphere 20.6
Central amygdala
nTPM: 61.6
1905 Male, age 76, both hemispheres 117.6
2826 Female, age 94, left hemisphere 68.4
2515 Male, age 75, right hemisphere 61.9
2239 Male, age 80, left hemisphere 38.8
2701 Female, age 91, right hemisphere 21.4
Corticomedial amygdala
nTPM: 50.3
2240 Male, age 76, both hemispheres 84.5
2428 Male, age 75, right hemisphere 74.6
2429 Female, age 94, left hemisphere 48.6
2535 Female, age 67, right hemisphere 41.0
2829 Male, age 80, left hemisphere 29.7
2242 Female, age 91, right hemisphere 23.4
Lateral amygdala
nTPM: 65.6
2830 Female, age 67, right hemisphere 105.3
1883 Male, age 76, both hemispheres 81.7
2534 Female, age 94, left hemisphere 72.7
2516 Male, age 75, right hemisphere 70.9
2256 Male, age 80, left hemisphere 34.1
2255 Female, age 91, right hemisphere 29.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 68.4
Samples: 152

Max nTPM: 260.7
Min nTPM: 9.3
Std nTPM: 42.1
Median nTPM: 55.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 260.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 225.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 217.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 199.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 174.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 161.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 152.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 149.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 147.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 130.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 130.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 126.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 125.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 123.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 123.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 121.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 120.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 119.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 119.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 118.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 114.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 105.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 100.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 99.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 97.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 92.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 91.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 90.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 88.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 87.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 87.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 85.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 84.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 84.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 83.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 82.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 80.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 76.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 75.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 74.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 73.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 71.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 70.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 70.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 69.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 68.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 67.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 67.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 67.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 67.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 64.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 63.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 62.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 61.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 61.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 61.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 60.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 60.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 59.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 59.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 59.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 57.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 56.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 55.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 54.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 54.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 54.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 53.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 53.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 53.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 52.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 52.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 51.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 51.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 51.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 50.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 49.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 48.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 48.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 48.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 48.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 47.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 47.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 47.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 47.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 47.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 46.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 46.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 46.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 46.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 46.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 45.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 45.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 45.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 43.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 41.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 41.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 40.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 40.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 40.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 38.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 37.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 37.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 37.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 37.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 37.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 36.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 36.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 34.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 34.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 34.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 33.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 31.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 31.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 31.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 30.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 30.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 29.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 25.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 24.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 24.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 24.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 23.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 23.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 22.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 21.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 21.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 20.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 18.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 17.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 16.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 14.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 9.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.4
FF:10151-102I7 76 years, female 52.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.0
Pig sample Sample description nTPM
Amygdala
nTPM: 26.0
Samples: 4

Max nTPM: 30.7
Min nTPM: 20.3
Sample A Female 28.7
Sample B Female 24.2
Sample C Male 30.7
Sample D Male 20.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 108.6
Samples: 4

Max nTPM: 121.9
Min nTPM: 97.6
Sample A Male 97.6
Sample B Male 103.2
Sample C Female 121.9
Sample D Female 111.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.3
74881146 Antisense, RP_060220_01_A04, Mouse strain C57BL/6J (56 days, male) 1.8
69549248 Antisense, RP_050125_01_C03, Mouse strain C57BL/6J (56 days, male) 0.7

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