BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.0 nTPM
HPA Brain:63.9 nTPM
GTEx:95.0 nTPM
FANTOM5:86.7 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:133.1 nTPM
Allen mouse:1.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 63.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.2
2846 Female, age 79, unknown 81.2
2481 Female, age 94, left hemisphere 78.0
2288 Male, age 75, left hemisphere 73.0
2290 Female, age 72, unknown 59.0
1854 Male, age 80, left hemisphere 40.7
1857 Female, age 85, left hemisphere 39.5
2289 Male, age 61, right hemisphere 31.3
1781 Male, age 74, unknown 30.8
Globus pallidus, externus
nTPM: 55.5
2772 Female, age 79, unknown 79.9
1996 Male, age 80, right hemisphere 70.2
2395 Male, age 75, both hemispheres 55.7
2646 Male, age 61, right hemisphere 38.1
2567 Female, age 72, unknown 33.4
Globus pallidus, internus
nTPM: 57.7
2287 Male, age 75, right hemisphere 88.6
1818 Male, age 74, unknown 71.6
2037 Male, age 80, right hemisphere 62.7
2483 Female, age 94, right hemisphere 56.0
2778 Female, age 91, both hemispheres 49.2
2111 Female, age 85, right hemisphere 46.0
2566 Female, age 72, unknown 29.6
Nucleus accumbens
nTPM: 40.3
2391 Female, age 94, left hemisphere 65.5
2286 Male, age 75, left hemisphere 63.0
2698 Female, age 72, unknown 42.5
1856 Female, age 91, right hemisphere 36.9
1783 Male, age 74, unknown 36.8
1806 Female, age 85, left hemisphere 32.5
2824 Male, age 61, right hemisphere 23.0
2732 Male, age 80, right hemisphere 21.9
Nucleus basalis of Meynert
nTPM: 63.9
2484 Female, age 94, left hemisphere 101.6
2821 Male, age 75, both hemispheres 63.6
2393 Male, age 80, right hemisphere 47.3
2569 Male, age 61, both hemispheres 43.3
Nucleus of the diagonal band
nTPM: 21.1
1812 Female, age 91, both hemispheres 25.6
2029 Male, age 61, right hemisphere 24.1
2195 Female, age 85, both hemispheres 23.8
2775 Male, age 80, right hemisphere 16.2
1979 Male, age 74, unknown 15.9
Putamen
nTPM: 46.7
2482 Female, age 94, left hemisphere 68.4
2466 Female, age 79, unknown 56.7
2489 Female, age 72, unknown 52.6
1829 Male, age 74, unknown 47.6
1937 Female, age 91, right hemisphere 41.4
1838 Male, age 80, right hemisphere 33.7
2647 Male, age 75, left hemisphere 26.5
Septal nuclei
nTPM: 25.5
2394 Male, age 61, left hemisphere 49.7
2199 Male, age 80, right hemisphere 31.7
2031 Female, age 72, unknown 28.9
1960 Male, age 74, unknown 19.0
2059 Female, age 85, both hemispheres 18.7
2629 Female, age 94, right hemisphere 15.4
2009 Female, age 91, both hemispheres 15.0
Stria terminalis, bed nucleus
nTPM: 19.4
2201 Male, age 74, unknown 20.3
2486 Female, age 94, both hemispheres 19.8
1974 Female, age 91, both hemispheres 18.2

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 95.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 77.1
Samples: 246

Max nTPM: 295.2
Min nTPM: 15.8
Std nTPM: 51.2
Median nTPM: 62.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 295.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 292.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 262.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 222.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 216.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 213.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 209.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 205.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 197.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 192.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 184.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.8
Samples: 246

Max nTPM: 304.5
Min nTPM: 8.2
Std nTPM: 44.3
Median nTPM: 35.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 304.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 302.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 277.2
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 203.1
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 195.5
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 191.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 188.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 178.0
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 149.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 148.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 145.0
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Brain - Putamen (basal ganglia)
Average nTPM: 95.0
Samples: 205

Max nTPM: 377.3
Min nTPM: 22.2
Std nTPM: 60.5
Median nTPM: 81.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 377.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 342.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 340.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 292.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 273.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 269.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 254.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 247.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 239.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 233.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 226.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.5
FF:10164-103B2 76 years, female 40.5
Nucleus accumbens
Scaled Tags Per Million: 86.7
FF:10037-101F1 23-56 years, mixed 86.7
Putamen
Scaled Tags Per Million: 28.7
FF:10176-103C5 60 years, female 28.7
Globus pallidus
Scaled Tags Per Million: 82.4
FF:10175-103C4 60 years, female 103.5
FF:10161-103A8 76 years, female 61.3

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 26.9
Pig sample Sample description nTPM
Caudate
nTPM: 17.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 17.4
Sample C Male 17.9
Sample D Male 22.6
Putamen
nTPM: 23.3
Samples: 4

Max nTPM: 28.2
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 22.6
Sample C Male 28.2
Sample D Male 23.7
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 44.0
Min nTPM: 16.2
Sample A Female 16.2
Sample B Female 22.4
Sample C Male 44.0
Sample D Male 25.0
Ventral pallidum
nTPM: 19.2
Samples: 4

Max nTPM: 25.0
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 19.3
Sample C Male 25.0
Sample D Male 17.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 133.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 130.2
Samples: 4

Max nTPM: 139.3
Min nTPM: 126.4
Sample A Male 128.7
Sample B Male 126.5
Sample C Female 126.4
Sample D Female 139.3
Septum
nTPM: 101.4
Samples: 4

Max nTPM: 110.3
Min nTPM: 90.7
Sample A Male 99.2
Sample B Male 110.3
Sample C Female 105.3
Sample D Female 90.7
Ventral forebrain
nTPM: 133.2
Samples: 4

Max nTPM: 154.6
Min nTPM: 123.0
Sample A Male 130.0
Sample B Male 125.0
Sample C Female 154.6
Sample D Female 123.0

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
74881146 Antisense, RP_060220_01_A04, Mouse strain C57BL/6J (56 days, male) 1.9
69549248 Antisense, RP_050125_01_C03, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 1.5
74881146 Antisense, RP_060220_01_A04, Mouse strain C57BL/6J (56 days, male) 1.9
69549248 Antisense, RP_050125_01_C03, Mouse strain C57BL/6J (56 days, male) 1.1

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