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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
280.5
Sample id
Sample description
nTPM
Amygdala nTPM: 280.5
2514
Male, age 75, right hemisphere
431.1
1987
Female, age 91, left hemisphere
338.3
2517
Female, age 94, left hemisphere
262.0
2814
Male, age 76, right hemisphere
189.7
2695
Female, age 67, right hemisphere
181.2
Basal amygdala nTPM: 217.9
2609
Male, age 75, right hemisphere
328.5
2110
Male, age 80, left hemisphere
286.9
2243
Female, age 91, right hemisphere
257.2
1955
Male, age 76, both hemispheres
203.8
2685
Female, age 94, left hemisphere
160.7
2827
Female, age 67, right hemisphere
70.4
Central amygdala nTPM: 206.1
2239
Male, age 80, left hemisphere
280.7
2515
Male, age 75, right hemisphere
234.5
2701
Female, age 91, right hemisphere
209.5
1905
Male, age 76, both hemispheres
184.3
2826
Female, age 94, left hemisphere
121.4
Corticomedial amygdala nTPM: 269.9
2428
Male, age 75, right hemisphere
375.3
2829
Male, age 80, left hemisphere
315.2
2429
Female, age 94, left hemisphere
300.3
2242
Female, age 91, right hemisphere
291.6
2240
Male, age 76, both hemispheres
218.0
2535
Female, age 67, right hemisphere
118.7
Lateral amygdala nTPM: 195.2
2516
Male, age 75, right hemisphere
303.6
2256
Male, age 80, left hemisphere
259.3
2255
Female, age 91, right hemisphere
232.3
1883
Male, age 76, both hemispheres
195.4
2534
Female, age 94, left hemisphere
118.5
2830
Female, age 67, right hemisphere
62.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
367.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 367.4
Samples: 152
Max nTPM: 1003.9
Min nTPM: 26.4
Std nTPM: 192.9
Median nTPM: 344.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1003.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
921.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
872.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
843.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
841.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
805.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
804.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
764.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
741.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
699.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
683.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
662.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
656.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
644.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
635.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
621.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
611.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
607.2
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
590.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
581.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
580.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
574.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
565.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
548.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
540.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
540.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
534.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
533.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
512.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
512.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
507.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
503.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
498.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
497.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
496.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
489.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
486.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
482.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
482.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
471.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
465.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
457.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
457.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
452.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
443.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
442.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
436.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
433.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
429.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
429.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
425.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
425.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
418.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
418.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
417.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
414.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
399.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
398.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
396.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
393.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
392.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
388.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
388.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
382.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
382.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
376.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
372.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
372.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
365.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
365.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
360.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
360.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
359.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
352.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
352.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
345.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
344.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
339.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
329.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
329.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
327.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
327.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
318.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
314.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
305.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
303.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
301.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
300.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
299.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
295.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
290.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
289.8
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
287.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
283.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
279.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
279.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
273.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
271.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
267.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
266.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
265.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
264.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
261.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
261.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
259.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
249.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
247.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
244.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
237.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
236.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
235.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
234.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
225.3
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
221.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
220.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
219.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
217.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
211.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
203.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
202.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
200.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
199.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
198.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
198.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
194.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
192.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
188.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
185.1
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
182.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
181.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
176.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
152.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
152.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
151.7
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
149.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
143.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
142.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
137.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
130.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
126.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
124.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
124.4
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
123.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
114.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
108.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
102.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
97.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
90.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
84.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
62.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
38.5
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
26.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
410.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 410.3
Samples: 4
Max nTPM: 441.3
Min nTPM: 362.3
Sample A
Male
362.3
Sample B
Male
403.1
Sample C
Female
434.5
Sample D
Female
441.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
