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FDFT1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:52.9 nTPM
FANTOM5:88.1 Scaled Tags Per Million
Pig:31.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008874
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.9
Samples: 246

Max nTPM: 105.5
Min nTPM: 29.7
Std nTPM: 9.9
Median nTPM: 50.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 105.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 78.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 76.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 75.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 72.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 72.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 72.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 71.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 71.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 71.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 71.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 69.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 69.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 68.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 68.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 67.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 67.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 67.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 66.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 66.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 65.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 65.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 65.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 65.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 65.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 65.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 64.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 64.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 64.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 64.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 64.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 64.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 63.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 63.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 63.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 63.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 63.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 62.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 62.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 61.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 61.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 61.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 61.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 61.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 61.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 60.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 60.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 60.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 60.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 60.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 60.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 60.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 59.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 59.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 59.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 58.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 58.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 58.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 58.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 58.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 58.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 57.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 57.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 57.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 57.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 57.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 57.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 57.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 57.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 56.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 56.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 56.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 56.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 56.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 56.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 56.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 56.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 56.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 56.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 55.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 55.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 55.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 55.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 55.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 55.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 55.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 55.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 55.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 55.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 54.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 54.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 54.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 54.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 54.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 54.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 53.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 53.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 53.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 53.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 53.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 52.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 52.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 52.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 52.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 52.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 52.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 51.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 51.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 51.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 51.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 51.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 51.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 51.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 51.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 50.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 50.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 50.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 50.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 50.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 50.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 50.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 50.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 50.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 50.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 50.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 50.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 50.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 50.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 50.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 50.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 50.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 49.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 49.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 49.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 49.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 49.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 49.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 49.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 49.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 49.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 49.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 49.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 49.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 49.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 49.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 49.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 49.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 49.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 49.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 48.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 48.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 48.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 48.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 48.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 48.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 48.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 48.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 47.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 47.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 47.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 47.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 47.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 47.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 47.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 47.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 47.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 47.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 47.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 46.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 46.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 46.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 46.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 46.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 46.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 46.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 46.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 46.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 46.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 46.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 46.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 45.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 45.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 45.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 45.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 45.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 45.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 45.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 45.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 45.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 45.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 44.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 44.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 44.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 44.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 44.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 44.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 43.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 43.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 43.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 43.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 43.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 43.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 43.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 43.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 43.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 43.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 43.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 42.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 42.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 42.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 42.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 42.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 42.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 42.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 42.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 42.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 42.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 42.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 41.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 41.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 41.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 41.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 41.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 41.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 41.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 41.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 40.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 40.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 40.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 40.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 40.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 40.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 40.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 40.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 40.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 39.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 39.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 39.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 38.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 37.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 35.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 29.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.1
FF:10164-103B2 76 years, female 88.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.6
Pig sample Sample description nTPM
Caudate
nTPM: 31.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 29.8
Sample A Female 29.8
Sample B Female 32.8
Sample C Male 34.0
Sample D Male 30.0

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