MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.9 nTPM
HPA Brain:140.6 nTPM
GTEx:88.9 nTPM
FANTOM5:384.8 Scaled Tags Per Million
Pig:203.9 nTPM
Mouse:208.4 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 140.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109.9
1830 Male, age 51, unknown 146.4
2411 Female, age 72, unknown 143.3
2019 Male, age 18, unknown 141.5
1870 Female, age 42, unknown 134.8
1833 Male, age 53, unknown 133.2
2828 Female, age 72, unknown 95.6
1827 Male, age 72, unknown 87.6
2219 Male, age 76, both hemispheres 80.6
2666 Male, age 74, left hemisphere 77.0
2586 Male, age 75, left hemisphere 59.2
Dorsal raphe nucleus
nTPM: 97.5
2750 Male, age 76, both hemispheres 129.3
2016 Female, age 72, unknown 100.0
1828 Male, age 53, unknown 98.2
2047 Male, age 72, unknown 80.0
2298 Female, age 72, unknown 79.8
Inferior colliculus
nTPM: 86.8
1848 Female, age 42, unknown 93.1
2097 Female, age 72, unknown 89.6
1890 Male, age 53, unknown 86.8
2849 Male, age 72, unknown 77.8
Median raphe nucleus
nTPM: 95.4
2220 Male, age 76, midline 95.4
Periaquaductal grey, anterior
nTPM: 81.6
1947 Male, age 18, unknown 93.3
2502 Female, age 75, unknown 90.1
1795 Male, age 51, unknown 61.3
Periaquaductal grey, dorsal
nTPM: 78.1
2464 Female, age 72, unknown 90.2
2850 Male, age 76, both hemispheres 88.8
1831 Male, age 72, unknown 79.2
1840 Male, age 53, unknown 54.0
Periaquaductal grey, lateral
nTPM: 84.9
2272 Male, age 74, both hemispheres 96.8
2053 Male, age 18, unknown 80.4
2140 Male, age 76, both hemispheres 77.5
Pretectal area
nTPM: 88.5
1815 Male, age 53, unknown 111.9
2273 Male, age 74, both hemispheres 106.7
1817 Female, age 42, unknown 102.2
2007 Male, age 72, unknown 95.3
2316 Male, age 76, right hemisphere 89.2
2224 Female, age 72, unknown 85.4
2667 Female, age 75, unknown 84.2
2407 Male, age 75, both hemispheres 79.2
2825 Male, age 18, unknown 78.0
1944 Female, age 72, unknown 75.0
1816 Male, age 51, unknown 66.3
Red nucleus
nTPM: 140.6
1821 Female, age 72, unknown 182.1
1865 Male, age 51, unknown 175.0
1904 Male, age 53, unknown 173.6
1954 Female, age 42, unknown 162.2
2823 Male, age 76, right hemisphere 148.1
2785 Male, age 18, unknown 145.3
2227 Male, age 72, unknown 140.6
2769 Male, age 72, unknown 137.7
2503 Female, age 72, unknown 127.6
2725 Female, age 75, unknown 108.5
2588 Male, age 74, left hemisphere 95.7
2584 Male, age 75, left hemisphere 91.2
Substantia nigra
nTPM: 98.3
1851 Male, age 51, unknown 108.9
1889 Female, age 72, unknown 106.0
2409 Female, age 72, unknown 105.0
2241 Male, age 72, unknown 103.5
2590 Female, age 75, unknown 102.3
2583 Male, age 75, right hemisphere 100.2
1941 Male, age 53, unknown 99.1
2699 Male, age 18, unknown 98.0
1916 Female, age 42, unknown 86.9
2665 Male, age 74, both hemispheres 73.6
Superior colliculus
nTPM: 95.5
1913 Female, age 42, unknown 131.1
2587 Male, age 74, left hemisphere 125.1
1995 Male, age 72, unknown 120.4
1895 Male, age 76, right hemisphere 110.7
2668 Female, age 75, unknown 103.0
1839 Male, age 51, unknown 93.1
2087 Female, age 72, unknown 76.9
1796 Male, age 53, unknown 72.5
2261 Male, age 18, unknown 65.1
2664 Male, age 75, both hemispheres 56.8
Ventral tegmental area
nTPM: 111.9
2223 Female, age 72, unknown 144.8
2410 Female, age 72, unknown 137.0
2218 Male, age 76, both hemispheres 109.5
1942 Male, age 51, unknown 94.7
1915 Female, age 42, unknown 92.8
2021 Male, age 53, unknown 92.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 88.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.9
Samples: 139

Max nTPM: 214.3
Min nTPM: 37.1
Std nTPM: 33.1
Median nTPM: 78.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 214.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 190.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 186.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 183.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 182.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 178.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 157.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 156.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 150.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 149.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 144.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 384.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 384.8
FF:10158-103A5 76 years, female 384.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 203.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 173.0
Samples: 4

Max nTPM: 221.9
Min nTPM: 138.3
Sample A Female 190.8
Sample B Female 140.9
Sample C Male 138.3
Sample D Male 221.9
Midbrain
nTPM: 204.0
Samples: 4

Max nTPM: 385.0
Min nTPM: 112.9
Sample A Female 385.0
Sample B Female 198.2
Sample C Male 119.8
Sample D Male 112.9
Periaqueductal gray
nTPM: 130.5
Samples: 3

Max nTPM: 149.2
Min nTPM: 104.3
Sample B Female 149.2
Sample C Male 104.3
Sample D Male 138.0
Superior colliculi
nTPM: 156.2
Samples: 4

Max nTPM: 169.6
Min nTPM: 119.1
Sample A Female 169.6
Sample B Female 119.1
Sample C Male 169.5
Sample D Male 166.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 208.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 208.4
Samples: 4

Max nTPM: 215.4
Min nTPM: 199.4
Sample A Male 199.4
Sample B Male 215.4
Sample C Female 210.0
Sample D Female 208.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
69028348 Antisense, RP_050316_01_B05, Mouse strain C57BL/6J (56 days, male) 10.4
72109423 Antisense, RP_050712_03_E09, Mouse strain C57BL/6J (56 days, male) 9.3
70813281 Antisense, RP_050712_03_E09, Mouse strain C57BL/6J (56 days, male) 3.6

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