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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:289.3 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Mouse:408.4 nTPM
Allen mouse:7.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 224.4
2396 Male, age 61, right hemisphere 278.6
2032 Female, age 42, unknown 201.8
2497 Male, age 66, unknown 192.7
Centromedial thalamic nucleus
nTPM: 203.9
2279 Female, age 85, left hemisphere 218.4
2401 Male, age 76, right hemisphere 189.5
Habenula
nTPM: 253.6
2252 Male, age 62, unknown 294.4
2276 Male, age 66, unknown 249.2
1957 Male, age 80, both hemispheres 242.0
2203 Male, age 61, left hemisphere 228.9
Lateral geniculate body
nTPM: 222.3
2575 Female, age 94, right hemisphere 248.1
2399 Male, age 61, left hemisphere 238.3
2035 Female, age 72, unknown 237.6
2841 Male, age 80, both hemispheres 226.1
1953 Male, age 62, unknown 220.8
2857 Male, age 74, right hemisphere 214.8
2106 Female, age 67, right hemisphere 210.3
2659 Male, age 66, unknown 182.5
Lateral thalamic nuclei
nTPM: 234.7
2573 Female, age 94, left hemisphere 320.5
2765 Female, age 67, both hemispheres 246.5
1903 Male, age 76, left hemisphere 206.5
2661 Female, age 72, unknown 205.8
2577 Male, age 74, both hemispheres 194.3
Medial dorsal thalamic nucleus
nTPM: 250.0
2572 Female, age 94, right hemisphere 495.0
1930 Female, age 42, unknown 278.4
1810 Male, age 48, unknown 266.4
1971 Male, age 61, right hemisphere 263.9
2498 Male, age 66, unknown 262.6
2039 Female, age 72, unknown 245.8
2492 Male, age 75, right hemisphere 236.1
2026 Male, age 62, unknown 231.1
2402 Female, age 67, both hemispheres 209.1
2576 Male, age 74, both hemispheres 208.0
1859 Male, age 76, both hemispheres 204.5
2283 Male, age 80, right hemisphere 182.2
2660 Female, age 72, unknown 166.3
Medial geniculate body
nTPM: 227.3
2650 Female, age 94, left hemisphere 318.2
2049 Male, age 76, both hemispheres 249.3
2217 Female, age 72, unknown 213.0
2207 Male, age 80, right hemisphere 207.2
2657 Male, age 74, right hemisphere 206.0
1811 Female, age 42, unknown 200.6
2571 Male, age 75, right hemisphere 196.9
Nucleus reuniens
nTPM: 240.3
2212 Female, age 67, left hemisphere 247.4
2205 Male, age 80, left hemisphere 244.6
2210 Female, age 85, left hemisphere 228.8
Nucleus rhomboideus
nTPM: 230.6
2213 Female, age 67, left hemisphere 271.0
2280 Female, age 85, left hemisphere 211.2
2206 Male, age 80, both hemispheres 209.8
Posterior thalamic nucleus
nTPM: 289.3
2649 Female, age 94, both hemispheres 557.2
2655 Male, age 74, right hemisphere 204.5
2495 Female, age 67, right hemisphere 199.7
2266 Male, age 76, right hemisphere 195.6
Pulvinar
nTPM: 213.9
2499 Male, age 66, unknown 241.2
2398 Male, age 61, left hemisphere 232.6
1932 Male, age 80, right hemisphere 228.5
1972 Male, age 62, unknown 219.6
2582 Female, age 72, unknown 213.4
1899 Female, age 42, unknown 207.6
2724 Male, age 74, right hemisphere 207.3
1929 Male, age 48, unknown 199.5
2496 Female, age 67, right hemisphere 196.6
2214 Male, age 76, right hemisphere 192.4
Subthalamic nucleus
nTPM: 248.0
2406 Female, age 72, unknown 349.0
2124 Male, age 62, unknown 264.1
2282 Male, age 61, both hemispheres 248.1
2056 Female, age 72, unknown 239.7
2275 Male, age 66, unknown 239.4
2216 Male, age 48, unknown 226.1
2658 Male, age 74, both hemispheres 217.5
2779 Female, age 42, unknown 200.0
Ventral posterolateral thalamic nucleus
nTPM: 198.8
2197 Male, age 80, both hemispheres 228.7
2397 Male, age 61, right hemisphere 219.1
2570 Male, age 75, right hemisphere 213.0
2740 Male, age 76, right hemisphere 205.9
2578 Male, age 74, both hemispheres 184.0
2581 Female, age 72, unknown 142.3
Ventral posteromedial thalamic nucleus
nTPM: 214.0
2202 Male, age 61, left hemisphere 239.8
2281 Male, age 75, right hemisphere 229.0
2127 Male, age 76, right hemisphere 219.8
2758 Male, age 80, both hemispheres 204.6
2653 Male, age 74, both hemispheres 177.0
Ventral thalamic nuclei
nTPM: 215.0
2291 Female, age 72, unknown 248.5
1912 Female, age 42, unknown 228.8
1845 Male, age 48, unknown 224.0
2204 Male, age 80, both hemispheres 224.0
1860 Male, age 76, both hemispheres 222.3
2580 Male, age 66, unknown 214.3
2285 Male, age 62, unknown 208.1
2858 Female, age 72, unknown 185.2
2652 Male, age 74, left hemisphere 180.0
Zona incerta
nTPM: 200.0
2215 Male, age 66, unknown 251.8
2208 Male, age 80, right hemisphere 208.1
2403 Male, age 62, unknown 202.9
2822 Male, age 74, right hemisphere 188.9
2663 Female, age 72, unknown 148.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 101.6
FF:10154-103A1 76 years, female 101.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

408.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 2.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.9
Sample A Male 1.9
Sample B Male 2.7
Sample C Female 2.5
Sample D Female 2.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.3
68910954 Antisense, RP_041208_02_A08, Mouse strain C57BL/6J (56 days, male) 7.3
Thalamus
Expression energy: 7.3
68910954 Antisense, RP_041208_02_A08, Mouse strain C57BL/6J (56 days, male) 7.3

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