MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.9 nTPM
HPA Brain:86.7 nTPM
GTEx:87.9 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:63.2 nTPM
Mouse:68.8 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 86.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.9
2411 Female, age 72, unknown 80.1
1827 Male, age 72, unknown 66.8
2828 Female, age 72, unknown 63.1
2666 Male, age 74, left hemisphere 60.5
1833 Male, age 53, unknown 57.0
1870 Female, age 42, unknown 57.0
2019 Male, age 18, unknown 56.8
1830 Male, age 51, unknown 53.6
2586 Male, age 75, left hemisphere 52.3
2219 Male, age 76, both hemispheres 51.5
Dorsal raphe nucleus
nTPM: 80.5
2047 Male, age 72, unknown 98.4
2298 Female, age 72, unknown 97.7
1828 Male, age 53, unknown 74.2
2750 Male, age 76, both hemispheres 68.0
2016 Female, age 72, unknown 64.4
Inferior colliculus
nTPM: 67.4
2097 Female, age 72, unknown 75.4
1890 Male, age 53, unknown 74.8
1848 Female, age 42, unknown 64.5
2849 Male, age 72, unknown 54.6
Median raphe nucleus
nTPM: 77.3
2220 Male, age 76, midline 77.3
Periaquaductal grey, anterior
nTPM: 62.2
1947 Male, age 18, unknown 72.4
1795 Male, age 51, unknown 59.1
2502 Female, age 75, unknown 55.3
Periaquaductal grey, dorsal
nTPM: 56.5
1840 Male, age 53, unknown 63.5
2464 Female, age 72, unknown 57.4
2850 Male, age 76, both hemispheres 52.8
1831 Male, age 72, unknown 52.2
Periaquaductal grey, lateral
nTPM: 54.7
2272 Male, age 74, both hemispheres 58.0
2053 Male, age 18, unknown 53.8
2140 Male, age 76, both hemispheres 52.4
Pretectal area
nTPM: 59.7
1816 Male, age 51, unknown 67.1
2667 Female, age 75, unknown 67.0
2224 Female, age 72, unknown 66.2
2273 Male, age 74, both hemispheres 64.5
1944 Female, age 72, unknown 62.1
2007 Male, age 72, unknown 61.8
2825 Male, age 18, unknown 60.7
1817 Female, age 42, unknown 58.7
2316 Male, age 76, right hemisphere 51.2
1815 Male, age 53, unknown 49.5
2407 Male, age 75, both hemispheres 48.2
Red nucleus
nTPM: 54.1
1821 Female, age 72, unknown 74.6
2725 Female, age 75, unknown 58.3
1954 Female, age 42, unknown 55.9
2227 Male, age 72, unknown 54.9
2769 Male, age 72, unknown 54.5
2584 Male, age 75, left hemisphere 53.8
2503 Female, age 72, unknown 52.9
2823 Male, age 76, right hemisphere 50.7
1865 Male, age 51, unknown 49.9
2785 Male, age 18, unknown 49.2
2588 Male, age 74, left hemisphere 47.9
1904 Male, age 53, unknown 46.2
Substantia nigra
nTPM: 86.7
1941 Male, age 53, unknown 115.4
1916 Female, age 42, unknown 109.8
1851 Male, age 51, unknown 98.9
2241 Male, age 72, unknown 92.2
2409 Female, age 72, unknown 83.4
2699 Male, age 18, unknown 81.6
2665 Male, age 74, both hemispheres 77.8
1889 Female, age 72, unknown 75.7
2590 Female, age 75, unknown 71.5
2583 Male, age 75, right hemisphere 60.5
Superior colliculus
nTPM: 54.4
2587 Male, age 74, left hemisphere 63.8
1839 Male, age 51, unknown 59.0
1895 Male, age 76, right hemisphere 58.8
2668 Female, age 75, unknown 58.7
1796 Male, age 53, unknown 56.6
2087 Female, age 72, unknown 56.6
2261 Male, age 18, unknown 54.6
2664 Male, age 75, both hemispheres 48.2
1913 Female, age 42, unknown 44.1
1995 Male, age 72, unknown 43.4
Ventral tegmental area
nTPM: 74.5
1915 Female, age 42, unknown 93.1
2410 Female, age 72, unknown 89.4
2218 Male, age 76, both hemispheres 76.0
1942 Male, age 51, unknown 63.8
2021 Male, age 53, unknown 63.2
2223 Female, age 72, unknown 61.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 87.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.9
Samples: 139

Max nTPM: 272.3
Min nTPM: 49.1
Std nTPM: 27.1
Median nTPM: 83.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 272.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 197.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 170.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 143.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 136.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 131.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 130.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 127.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 124.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 120.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 119.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.5
FF:10158-103A5 76 years, female 54.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.3
Samples: 4

Max nTPM: 84.9
Min nTPM: 34.3
Sample A Female 75.9
Sample B Female 84.9
Sample C Male 57.9
Sample D Male 34.3
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 65.3
Min nTPM: 42.2
Sample A Female 65.3
Sample B Female 46.3
Sample C Male 42.2
Sample D Male 43.7
Periaqueductal gray
nTPM: 50.0
Samples: 3

Max nTPM: 61.4
Min nTPM: 42.8
Sample B Female 45.8
Sample C Male 61.4
Sample D Male 42.8
Superior colliculi
nTPM: 50.1
Samples: 4

Max nTPM: 68.4
Min nTPM: 41.1
Sample A Female 68.4
Sample B Female 43.2
Sample C Male 47.8
Sample D Male 41.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 72.1
Min nTPM: 64.8
Sample A Male 71.3
Sample B Male 67.1
Sample C Female 64.8
Sample D Female 72.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
73834104 Antisense, RP_050725_02_F02, Mouse strain C57BL/6J (56 days, male) 3.4
70813922 Antisense, RP_050725_02_F02, Mouse strain C57BL/6J (56 days, male) 2.2

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