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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:3634.0 nTPM
FANTOM5:1822.9 Scaled Tags Per Million
Pig:805.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041602Antibody CAB020769
Glial cells HighHigh
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3634.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3634.0
Samples: 246

Max nTPM: 15620.8
Min nTPM: 923.9
Std nTPM: 1732.0
Median nTPM: 3275.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15620.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11078.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10217.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9150.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 9078.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 7883.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 7823.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 6980.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 6965.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 6909.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6805.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 6665.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 6624.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 6617.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 6572.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 6356.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6259.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 6249.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 6196.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 6130.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5997.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 5736.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 5726.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 5724.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 5696.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5691.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 5574.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 5488.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5482.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 5356.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 5226.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 5158.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 5128.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 5102.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 5099.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 5056.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 5027.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5014.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 5011.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 5003.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 4901.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4888.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 4883.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 4824.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 4813.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 4779.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4738.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 4711.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 4634.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4603.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 4593.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 4544.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 4534.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 4510.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4508.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4500.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 4469.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 4430.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 4403.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4338.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4330.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 4317.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4295.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 4269.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4214.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 4211.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4197.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 4138.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 4131.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 4121.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 4065.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 4044.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 4038.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 4019.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 4006.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 3980.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3967.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 3956.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 3940.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 3918.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 3915.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3866.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3827.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 3800.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 3792.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 3767.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 3746.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 3744.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3722.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3719.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3681.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3653.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 3650.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3634.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3628.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 3626.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 3615.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 3599.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 3586.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 3577.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 3565.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3548.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 3541.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 3522.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3519.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 3518.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 3471.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3463.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 3450.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 3445.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 3415.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 3383.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 3380.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 3342.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3325.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 3322.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3322.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3320.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3296.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3291.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 3285.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3279.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 3279.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3272.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3263.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 3228.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 3217.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 3209.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3208.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 3199.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 3190.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 3169.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3137.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3130.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 3068.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 3063.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 3061.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 3053.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 3039.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3037.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 3036.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 3027.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 3014.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2996.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2993.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2951.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2951.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2929.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2908.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2901.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2897.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2884.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2880.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2878.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2872.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2853.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2852.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2846.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2840.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2822.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2805.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2781.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2775.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2772.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2768.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2750.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2748.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2721.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 2718.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 2694.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2653.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2652.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 2652.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 2610.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2604.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2593.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2585.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2583.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2583.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2557.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2542.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2533.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2523.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2504.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2498.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2485.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2482.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2448.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2443.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2430.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2426.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 2424.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2412.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2411.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2384.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2383.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2379.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 2346.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2342.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2300.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2291.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2287.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2274.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2257.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2249.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2232.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2231.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2225.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 2221.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2194.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2178.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2175.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2152.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2148.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2144.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2120.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2119.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2098.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2055.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2044.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2013.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1988.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1973.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1973.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1946.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1936.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1934.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1920.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1914.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1897.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1869.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1846.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1830.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1800.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1798.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1747.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1730.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1707.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1696.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1652.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1634.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1622.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1367.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1319.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1290.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 923.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1822.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1822.9
FF:10164-103B2 76 years, female 1822.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

805.5
Pig sample Sample description nTPM
Caudate
nTPM: 805.5
Samples: 4

Max nTPM: 920.8
Min nTPM: 676.6
Sample A Female 733.8
Sample B Female 890.8
Sample C Male 920.8
Sample D Male 676.6

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