We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FTL
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • FTL
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: High
Goblet cells: Medium
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2728.2 nTPM
HPA:2680.4 nTPM
GTEx:2728.2 nTPM
FANTOM5:3846.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041602Antibody CAB020769
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli High-
Glandular cells -Medium
Goblet cells Medium-
Paneth cells Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2680.4
overview
Male, age 65
Small intestine sample 232
nTPM: 2895.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 3420
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2259.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2146.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2728.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2728.2
Samples: 187

Max nTPM: 5217.0
Min nTPM: 1329.4
Std nTPM: 890.7
Median nTPM: 2584.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 5217.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5162.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 5081.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5024.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 4955.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4876.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 4846.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 4843.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 4778.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4754.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 4371.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 4360.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 4210.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 4200.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 4172.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 4156.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 4046.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 4000.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3980.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3899.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3881.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 3870.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 3863.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3847.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3840.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3765.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 3741.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3666.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 3640.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3581.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3575.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 3572.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 3570.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 3554.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3553.8
GTEX-1192X-2526-SM-59868 50-59 years, male 3534.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 3495.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3473.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 3421.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3363.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 3353.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3351.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3328.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3318.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3302.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3294.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3268.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3242.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 3193.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 3142.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3141.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3126.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3116.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3064.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 3056.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 3055.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3049.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3037.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 3031.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3000.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2981.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2964.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 2958.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2942.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2936.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2931.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2928.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 2924.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2910.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2903.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2892.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2885.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2865.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2857.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2856.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2836.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2812.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2810.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2802.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2801.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2776.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2767.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2755.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2720.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2719.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2694.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2681.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2678.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2670.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2668.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2661.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2660.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 2606.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2584.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2564.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2540.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2493.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2468.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2462.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2455.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2455.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2451.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2438.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2425.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2423.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2420.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2398.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2393.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2389.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2370.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2367.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2353.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2325.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2320.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2319.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2311.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2283.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2273.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2253.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2250.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2246.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2236.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2230.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2218.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2210.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2206.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2167.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2163.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2156.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2145.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2130.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2108.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2101.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2076.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2055.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2043.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2036.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2032.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2026.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2019.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2001.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1997.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1996.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1991.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1989.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1984.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1982.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1969.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1951.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1937.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1937.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1935.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1926.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1909.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1906.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1898.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1896.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1893.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1893.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1885.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1855.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1817.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1811.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1796.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1775.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1773.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 1759.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1754.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1717.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1714.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1683.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1659.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1659.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1651.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1640.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1638.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1632.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1630.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1529.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1527.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1494.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1490.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1435.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1349.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1339.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1337.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1329.4
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3846.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3846.5
FF:10024-101D6 15,40,85 years, mixed 3846.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org