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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1746.9 nTPM
GTEx:1746.9 nTPM
FANTOM5:4106.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041602Antibody CAB020769
Squamous epithelial cells MediumLow




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1746.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1746.9
Samples: 156

Max nTPM: 4546.7
Min nTPM: 531.4
Std nTPM: 734.7
Median nTPM: 1593.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 4546.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4024.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3715.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3680.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 3567.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3563.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 3342.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 3284.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 3276.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3190.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 3178.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 2799.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2762.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2709.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2653.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2650.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2605.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2603.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2593.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2523.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2483.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2482.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2462.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 2450.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2431.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2405.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2400.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2366.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2360.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2356.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2343.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2331.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2326.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 2296.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2289.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2251.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2182.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2177.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2131.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2109.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2103.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2093.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2078.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2074.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2070.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2046.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2039.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2029.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2015.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1999.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1993.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1985.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1977.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1975.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1971.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1955.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1945.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1914.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1895.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1797.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1756.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1754.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1752.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1744.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1741.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1736.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1730.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1691.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1690.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1679.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1658.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1646.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1645.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1644.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1632.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1614.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1606.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1603.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1583.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1574.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1569.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1551.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1541.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1528.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1509.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1481.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1477.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1466.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1462.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1434.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1424.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1418.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1416.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1411.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1403.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1394.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1391.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1387.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1382.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1363.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1362.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1350.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1348.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1331.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1327.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1304.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1303.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1302.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 1300.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1284.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1274.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1272.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1265.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1218.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1200.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1192.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1191.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1177.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1165.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1164.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1154.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1146.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1146.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1144.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1140.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1123.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1111.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1107.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1107.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1105.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1097.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1090.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1088.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1086.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1044.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1038.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1029.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1014.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1011.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1000.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 998.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 987.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 984.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 924.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 902.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 891.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 872.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 830.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 814.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 776.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 767.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 766.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 706.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 663.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 592.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 531.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4106.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 4106.4
FF:10204-103F6 68 years, female 4106.4

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