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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:249.2 nTPM
FANTOM5:599.2 Scaled Tags Per Million
Pig:777.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018122Antibody HPA027478Antibody HPA028386Antibody CAB010337
Glial cells Not detectedNot detectedNot detectedHigh
Neuronal cells Not detectedLowMediumNot detected









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 249.2
Samples: 246

Max nTPM: 848.3
Min nTPM: 133.8
Std nTPM: 68.7
Median nTPM: 239.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 848.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 701.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 454.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 421.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 399.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 390.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 369.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 367.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 347.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 347.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 339.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 338.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 338.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 329.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 329.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 327.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 326.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 326.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 326.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 319.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 319.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 314.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 311.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 311.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 311.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 310.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 310.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 309.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 309.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 309.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 307.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 300.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 300.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 297.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 297.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 296.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 296.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 295.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 295.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 291.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 288.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 286.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 286.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 286.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 286.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 284.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 283.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 282.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 282.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 280.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 280.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 280.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 279.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 279.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 278.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 276.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 276.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 274.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 273.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 273.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 272.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 272.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 271.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 271.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 270.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 270.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 270.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 269.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 266.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 266.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 266.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 265.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 265.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 265.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 264.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 264.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 264.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 263.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 263.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 262.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 262.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 261.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 260.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 260.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 259.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 259.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 258.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 258.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 258.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 258.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 257.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 255.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 254.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 254.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 253.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 252.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 252.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 252.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 252.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 252.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 252.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 252.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 251.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 250.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 250.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 248.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 248.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 247.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 247.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 246.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 246.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 245.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 245.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 244.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 243.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 243.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 243.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 243.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 242.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 241.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 241.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 240.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 239.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 239.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 238.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 238.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 237.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 237.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 237.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 237.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 234.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 233.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 233.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 233.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 233.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 232.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 231.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 231.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 231.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 231.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 230.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 230.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 229.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 229.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 229.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 228.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 228.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 228.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 226.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 226.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 225.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 225.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 225.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 225.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 224.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 224.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 224.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 223.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 223.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 222.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 221.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 221.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 221.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 221.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 220.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 219.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 219.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 218.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 218.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 217.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 217.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 216.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 216.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 216.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 216.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 216.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 216.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 216.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 215.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 215.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 214.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 212.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 211.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 211.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 211.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 211.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 210.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 210.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 210.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 210.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 210.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 210.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 207.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 207.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 207.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 207.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 205.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 205.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 205.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 204.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 204.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 203.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 202.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 200.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 200.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 200.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 199.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 199.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 198.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 198.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 198.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 197.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 196.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 194.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 193.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 193.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 193.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 192.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 190.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 190.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 189.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 186.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 186.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 186.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 183.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 182.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 182.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 182.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 182.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 179.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 178.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 178.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 175.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 173.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 173.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 171.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 170.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 170.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 169.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 168.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 168.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 166.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 159.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 142.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 139.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 133.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

599.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 599.2
FF:10164-103B2 76 years, female 599.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

777.3
Pig sample Sample description nTPM
Caudate
nTPM: 777.3
Samples: 4

Max nTPM: 850.9
Min nTPM: 672.9
Sample A Female 802.7
Sample B Female 850.9
Sample C Male 782.7
Sample D Male 672.9

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