We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GNAS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GNAS
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:486.4 nTPM
HPA:486.4 nTPM
GTEx:176.6 nTPM
FANTOM5:687.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018122Antibody HPA027478Antibody HPA028386Antibody CAB010337
Glandular cells HighHighLowLow









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

486.4
overview
Male, age 65
Small intestine sample 232
nTPM: 514.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 464.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 487.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 478.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 176.6
Samples: 187

Max nTPM: 354.7
Min nTPM: 101.1
Std nTPM: 48.0
Median nTPM: 164.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 354.7
GTEX-1192X-2526-SM-59868 50-59 years, male 335.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 334.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 332.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 318.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 316.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 286.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 286.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 277.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 273.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 269.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 269.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 267.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 266.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 256.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 248.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 244.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 243.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 242.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 235.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 234.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 233.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 233.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 232.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 230.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 228.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 227.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 226.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 224.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 222.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 222.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 219.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 219.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 218.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 209.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 209.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 208.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 206.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 206.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 204.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 203.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 202.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 202.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 201.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 201.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 199.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 198.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 193.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 192.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 192.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 192.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 190.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 189.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 188.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 187.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 186.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 186.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 186.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 184.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 184.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 184.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 184.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 184.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 183.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 183.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 181.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 181.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 180.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 179.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 177.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 177.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 176.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 175.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 174.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 173.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 173.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 172.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 172.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 171.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 169.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 168.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 168.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 167.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 166.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 166.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 166.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 166.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 165.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 165.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 164.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 164.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 164.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 164.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 164.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 162.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 162.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 161.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 161.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 161.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 160.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 159.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 159.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 159.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 158.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 157.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 157.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 157.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 156.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 154.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 154.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 154.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 154.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 154.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 154.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 153.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 153.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 153.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 152.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 152.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 151.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 151.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 151.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 150.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 150.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 150.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 150.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 149.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 149.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 149.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 148.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 148.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 148.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 148.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 148.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 148.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 147.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 147.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 147.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 147.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 146.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 146.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 146.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 146.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 145.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 144.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 144.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 144.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 142.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 142.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 142.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 141.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 140.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 140.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 140.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 139.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 138.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 138.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 137.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 136.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 135.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 135.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 133.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 132.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 131.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 131.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 130.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 130.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 130.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 130.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 129.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 128.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 127.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 127.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 124.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 123.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 123.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 122.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 121.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 121.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 118.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 116.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 115.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 110.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 108.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 105.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 103.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 101.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

687.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 687.4
FF:10024-101D6 15,40,85 years, mixed 687.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org