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EPB41L1
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  • EPB41L1
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:265.7 nTPM
FANTOM5:125.5 Scaled Tags Per Million
Pig:184.9 nTPM
Mouse:86.9 nTPM
Allen mouse:5.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 155.7
2497 Male, age 66, unknown 190.6
2032 Female, age 42, unknown 183.8
2396 Male, age 61, right hemisphere 92.6
Centromedial thalamic nucleus
nTPM: 183.4
2401 Male, age 76, right hemisphere 187.2
2279 Female, age 85, left hemisphere 179.6
Habenula
nTPM: 189.4
2276 Male, age 66, unknown 240.7
2203 Male, age 61, left hemisphere 184.6
2252 Male, age 62, unknown 176.0
1957 Male, age 80, both hemispheres 156.1
Lateral geniculate body
nTPM: 216.0
2035 Female, age 72, unknown 255.9
2106 Female, age 67, right hemisphere 238.0
2399 Male, age 61, left hemisphere 230.0
1953 Male, age 62, unknown 219.7
2857 Male, age 74, right hemisphere 207.3
2659 Male, age 66, unknown 205.0
2841 Male, age 80, both hemispheres 199.1
2575 Female, age 94, right hemisphere 173.1
Lateral thalamic nuclei
nTPM: 194.7
2577 Male, age 74, both hemispheres 218.8
2765 Female, age 67, both hemispheres 208.6
2661 Female, age 72, unknown 196.3
2573 Female, age 94, left hemisphere 190.1
1903 Male, age 76, left hemisphere 159.7
Medial dorsal thalamic nucleus
nTPM: 197.9
2492 Male, age 75, right hemisphere 263.2
2039 Female, age 72, unknown 237.0
2498 Male, age 66, unknown 233.2
2576 Male, age 74, both hemispheres 231.5
2026 Male, age 62, unknown 204.1
2402 Female, age 67, both hemispheres 198.4
1810 Male, age 48, unknown 195.4
2660 Female, age 72, unknown 187.8
2572 Female, age 94, right hemisphere 185.7
2283 Male, age 80, right hemisphere 178.4
1859 Male, age 76, both hemispheres 170.8
1930 Female, age 42, unknown 153.9
1971 Male, age 61, right hemisphere 133.5
Medial geniculate body
nTPM: 200.4
2571 Male, age 75, right hemisphere 311.6
2217 Female, age 72, unknown 219.8
2049 Male, age 76, both hemispheres 210.5
2657 Male, age 74, right hemisphere 179.9
2207 Male, age 80, right hemisphere 178.0
2650 Female, age 94, left hemisphere 162.4
1811 Female, age 42, unknown 140.2
Nucleus reuniens
nTPM: 239.3
2205 Male, age 80, left hemisphere 250.1
2212 Female, age 67, left hemisphere 245.9
2210 Female, age 85, left hemisphere 221.9
Nucleus rhomboideus
nTPM: 187.3
2280 Female, age 85, left hemisphere 229.5
2206 Male, age 80, both hemispheres 171.6
2213 Female, age 67, left hemisphere 160.9
Posterior thalamic nucleus
nTPM: 204.3
2649 Female, age 94, both hemispheres 238.2
2655 Male, age 74, right hemisphere 230.6
2495 Female, age 67, right hemisphere 195.6
2266 Male, age 76, right hemisphere 152.8
Pulvinar
nTPM: 191.8
1972 Male, age 62, unknown 237.1
2398 Male, age 61, left hemisphere 234.0
2724 Male, age 74, right hemisphere 221.6
2496 Female, age 67, right hemisphere 201.4
2582 Female, age 72, unknown 182.4
1929 Male, age 48, unknown 180.6
1932 Male, age 80, right hemisphere 178.3
1899 Female, age 42, unknown 168.7
2214 Male, age 76, right hemisphere 159.7
2499 Male, age 66, unknown 154.5
Subthalamic nucleus
nTPM: 265.7
2779 Female, age 42, unknown 320.8
2658 Male, age 74, both hemispheres 299.4
2124 Male, age 62, unknown 295.9
2406 Female, age 72, unknown 280.1
2282 Male, age 61, both hemispheres 242.8
2216 Male, age 48, unknown 238.5
2056 Female, age 72, unknown 224.5
2275 Male, age 66, unknown 223.6
Ventral posterolateral thalamic nucleus
nTPM: 220.1
2570 Male, age 75, right hemisphere 294.7
2740 Male, age 76, right hemisphere 245.9
2578 Male, age 74, both hemispheres 229.1
2397 Male, age 61, right hemisphere 207.8
2581 Female, age 72, unknown 197.8
2197 Male, age 80, both hemispheres 145.1
Ventral posteromedial thalamic nucleus
nTPM: 191.5
2281 Male, age 75, right hemisphere 248.6
2653 Male, age 74, both hemispheres 230.0
2127 Male, age 76, right hemisphere 190.0
2758 Male, age 80, both hemispheres 147.1
2202 Male, age 61, left hemisphere 141.7
Ventral thalamic nuclei
nTPM: 196.4
2858 Female, age 72, unknown 247.0
1845 Male, age 48, unknown 225.2
2652 Male, age 74, left hemisphere 218.7
2291 Female, age 72, unknown 199.8
2204 Male, age 80, both hemispheres 189.0
2580 Male, age 66, unknown 179.3
2285 Male, age 62, unknown 172.7
1912 Female, age 42, unknown 168.1
1860 Male, age 76, both hemispheres 167.7
Zona incerta
nTPM: 210.3
2822 Male, age 74, right hemisphere 234.5
2403 Male, age 62, unknown 230.0
2215 Male, age 66, unknown 199.0
2208 Male, age 80, right hemisphere 196.6
2663 Female, age 72, unknown 191.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 125.5
FF:10154-103A1 76 years, female 125.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.9
Pig sample Sample description nTPM
Thalamus
nTPM: 184.9
Samples: 4

Max nTPM: 226.3
Min nTPM: 141.5
Sample A Female 186.5
Sample B Female 226.3
Sample C Male 185.3
Sample D Male 141.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 86.9
Samples: 4

Max nTPM: 92.7
Min nTPM: 79.4
Sample A Male 79.4
Sample B Male 88.6
Sample C Female 92.7
Sample D Female 87.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 5.0
74047777 Antisense, RP_051214_02_A02, Mouse strain C57BL/6J (56 days, male) 9.4
68203494 Antisense, RP_041208_01_D02, Mouse strain C57BL/6J (56 days, male) 6.7
70795892 Antisense, RP_050712_02_B09, Mouse strain C57BL/6J (56 days, male) 2.2
74750065 Antisense, RP_060220_05_F07, Mouse strain C57BL/6J (56 days, male) 1.7

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