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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:233.0 nTPM
HPA Brain:160.9 nTPM
GTEx:233.0 nTPM
FANTOM5:199.2 Scaled Tags Per Million
Mouse:581.8 nTPM
Allen mouse:21.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.9
Sample id Sample description nTPM
Amygdala
nTPM: 100.2
2517 Female, age 94, left hemisphere 135.4
1987 Female, age 91, left hemisphere 101.1
2814 Male, age 76, right hemisphere 95.0
2695 Female, age 67, right hemisphere 85.5
2514 Male, age 75, right hemisphere 84.1
Basal amygdala
nTPM: 157.6
2110 Male, age 80, left hemisphere 211.8
2685 Female, age 94, left hemisphere 198.6
2243 Female, age 91, right hemisphere 174.4
1955 Male, age 76, both hemispheres 146.5
2827 Female, age 67, right hemisphere 111.5
2609 Male, age 75, right hemisphere 103.0
Central amygdala
nTPM: 114.4
2826 Female, age 94, left hemisphere 157.9
2239 Male, age 80, left hemisphere 145.9
2515 Male, age 75, right hemisphere 98.0
2701 Female, age 91, right hemisphere 86.2
1905 Male, age 76, both hemispheres 84.2
Corticomedial amygdala
nTPM: 160.9
2829 Male, age 80, left hemisphere 231.3
2242 Female, age 91, right hemisphere 191.9
2240 Male, age 76, both hemispheres 152.2
2535 Female, age 67, right hemisphere 145.3
2429 Female, age 94, left hemisphere 139.7
2428 Male, age 75, right hemisphere 105.1
Lateral amygdala
nTPM: 113.6
2534 Female, age 94, left hemisphere 165.1
1883 Male, age 76, both hemispheres 125.3
2256 Male, age 80, left hemisphere 120.7
2255 Female, age 91, right hemisphere 100.9
2516 Male, age 75, right hemisphere 88.3
2830 Female, age 67, right hemisphere 81.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 233.0
Samples: 152

Max nTPM: 686.6
Min nTPM: 92.2
Std nTPM: 97.6
Median nTPM: 205.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 686.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 657.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 515.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 484.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 449.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 442.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 432.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 425.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 422.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 403.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 401.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 396.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 383.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 380.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 352.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 342.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 334.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 320.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 318.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 316.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 316.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 310.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 309.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 306.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 305.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 304.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 300.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 299.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 299.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 299.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 299.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 297.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 294.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 294.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 294.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 291.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 290.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 287.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 284.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 282.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 274.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 272.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 272.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 266.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 263.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 262.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 257.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 256.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 256.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 251.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 249.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 247.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 246.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 244.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 243.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 242.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 241.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 239.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 237.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 236.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 235.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 234.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 232.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 229.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 225.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 224.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 222.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 219.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 218.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 217.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 216.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 209.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 209.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 207.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 206.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 205.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 205.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 205.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 205.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 204.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 203.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 202.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 201.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 201.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 200.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 198.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 198.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 197.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 197.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 195.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 192.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 192.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 191.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 191.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 189.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 187.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 186.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 183.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 182.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 181.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 179.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 175.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 175.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 172.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 171.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 170.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 169.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 167.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 167.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 165.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 165.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 164.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 163.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 161.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 161.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 161.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 159.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 159.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 158.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 158.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 156.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 156.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 155.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 154.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 152.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 151.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 149.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 146.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 146.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 145.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 144.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 144.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 142.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 142.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 139.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 139.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 138.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 138.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 135.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 135.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 135.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 134.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 134.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 133.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 129.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 124.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 124.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 121.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 118.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

199.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 199.2
FF:10151-102I7 76 years, female 199.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

581.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 581.8
Samples: 4

Max nTPM: 603.8
Min nTPM: 570.2
Sample A Male 576.4
Sample B Male 603.8
Sample C Female 570.2
Sample D Female 576.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.8
68269071 Antisense, RP_041208_01_H10, Mouse strain C57BL/6J (56 days, male) 21.8

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