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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:86.7 nTPM
HPA Brain:79.6 nTPM
GTEx:86.7 nTPM
FANTOM5:85.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 60.4
2565 Male, age 75, midline 88.6
2194 Female, age 79, both hemispheres 58.3
1981 Female, age 72, midline 57.2
2816 Male, age 47, midline 55.5
2048 Male, age 55, midline 42.1
Cervical spinal cord, dorsal horn
nTPM: 71.9
2297 Male, age 75, both hemispheres 106.1
2069 Male, age 47, both hemispheres 73.3
1877 Male, age 55, unknown 67.9
2173 Female, age 72, unknown 63.3
2296 Male, age 66, both hemispheres 60.8
2721 Male, age 90, both hemispheres 60.2
Cervical spinal cord, ventral horn
nTPM: 79.6
2809 Male, age 90, both hemispheres 118.3
2480 Male, age 75, both hemispheres 114.0
2295 Male, age 66, both hemispheres 70.7
2098 Female, age 72, unknown 69.0
2820 Female, age 79, both hemispheres 52.9
2068 Male, age 55, unknown 52.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 86.7
Samples: 159

Max nTPM: 174.4
Min nTPM: 49.1
Std nTPM: 23.4
Median nTPM: 79.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 174.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 159.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 158.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 156.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 152.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 150.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 148.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 146.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 139.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 138.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 135.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 134.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 119.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 118.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 117.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 116.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 115.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 115.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 114.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 114.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 113.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 110.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 110.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 110.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 108.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 104.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 104.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 103.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 103.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 101.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 101.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 100.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 100.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 99.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 98.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 98.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 97.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 97.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 95.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 94.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 93.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 92.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 92.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 91.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 91.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 91.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 90.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 90.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 89.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 89.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 88.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 87.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 86.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 86.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 86.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 86.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 86.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 86.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 85.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 85.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 85.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 85.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 84.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 84.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 84.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 83.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 83.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 82.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 82.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 82.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 81.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 81.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 81.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 81.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 80.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 80.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 80.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 79.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 79.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 79.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 79.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 79.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 79.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 79.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 78.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 78.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 78.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 77.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 77.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 77.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 76.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 76.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 76.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 76.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 76.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 76.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 76.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 76.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 75.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 75.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 75.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 74.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 74.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 74.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 74.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 74.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 74.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 74.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 74.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 74.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 73.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 73.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 72.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 72.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 72.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 72.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 72.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 72.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 70.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 70.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 70.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 70.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 69.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 69.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 69.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 69.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 69.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 69.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 69.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 69.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 68.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 68.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 67.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 67.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 67.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 66.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 66.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 65.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 65.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 65.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 63.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 62.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 61.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 61.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 61.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 61.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 61.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 60.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 60.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 59.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 58.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 58.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 56.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 56.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 55.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 49.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 85.5
FF:10159-103A6 76 years, female 92.8
FF:10181-103D1 60 years, female 78.1

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