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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:491.8 nTPM
HPA Brain:367.5 nTPM
GTEx:491.8 nTPM
FANTOM5:26.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 298.5
2565 Male, age 75, midline 382.1
1981 Female, age 72, midline 335.6
2048 Male, age 55, midline 270.1
2816 Male, age 47, midline 265.5
2194 Female, age 79, both hemispheres 239.4
Cervical spinal cord, dorsal horn
nTPM: 287.8
2173 Female, age 72, unknown 380.5
2069 Male, age 47, both hemispheres 324.6
2296 Male, age 66, both hemispheres 297.0
1877 Male, age 55, unknown 294.8
2721 Male, age 90, both hemispheres 234.5
2297 Male, age 75, both hemispheres 195.2
Cervical spinal cord, ventral horn
nTPM: 367.5
2809 Male, age 90, both hemispheres 486.6
2480 Male, age 75, both hemispheres 451.9
2098 Female, age 72, unknown 435.2
2295 Male, age 66, both hemispheres 318.9
2068 Male, age 55, unknown 300.4
2820 Female, age 79, both hemispheres 211.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

491.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 491.8
Samples: 159

Max nTPM: 1119.7
Min nTPM: 198.9
Std nTPM: 130.6
Median nTPM: 471.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1119.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 940.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 913.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 887.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 886.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 749.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 732.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 731.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 726.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 676.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 670.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 665.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 661.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 660.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 649.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 646.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 639.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 638.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 635.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 625.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 607.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 606.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 600.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 600.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 599.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 599.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 597.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 596.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 592.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 574.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 573.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 570.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 563.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 563.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 562.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 559.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 553.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 550.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 549.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 546.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 544.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 541.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 538.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 531.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 530.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 527.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 527.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 523.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 523.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 522.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 522.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 518.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 517.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 513.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 511.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 511.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 510.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 507.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 505.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 504.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 503.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 501.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 501.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 499.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 497.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 494.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 494.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 491.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 490.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 487.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 486.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 485.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 483.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 483.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 481.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 480.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 479.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 477.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 474.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 471.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 467.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 466.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 466.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 463.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 462.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 459.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 459.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 456.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 456.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 456.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 455.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 453.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 453.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 453.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 452.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 450.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 447.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 447.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 446.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 446.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 444.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 441.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 441.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 440.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 440.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 439.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 437.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 435.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 432.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 430.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 429.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 423.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 422.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 417.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 416.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 414.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 414.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 412.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 412.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 410.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 410.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 410.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 408.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 407.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 406.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 406.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 401.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 400.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 398.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 396.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 395.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 394.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 391.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 390.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 389.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 385.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 380.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 367.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 364.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 362.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 361.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 361.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 357.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 354.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 353.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 346.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 345.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 344.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 338.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 336.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 332.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 324.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 324.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 292.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 285.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 265.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 260.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 245.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 198.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 26.8
FF:10159-103A6 76 years, female 27.2
FF:10181-103D1 60 years, female 26.4

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