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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:118.7 nTPM
HPA Brain:109.2 nTPM
GTEx:118.7 nTPM
FANTOM5:222.2 Scaled Tags Per Million
Pig:105.4 nTPM
Mouse:196.3 nTPM
Allen mouse:23.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.2
Sample id Sample description nTPM
Amygdala
nTPM: 90.4
2814 Male, age 76, right hemisphere 120.4
2517 Female, age 94, left hemisphere 89.2
2695 Female, age 67, right hemisphere 86.0
1987 Female, age 91, left hemisphere 80.1
2514 Male, age 75, right hemisphere 76.5
Basal amygdala
nTPM: 102.1
2685 Female, age 94, left hemisphere 118.7
2243 Female, age 91, right hemisphere 117.1
2609 Male, age 75, right hemisphere 112.8
1955 Male, age 76, both hemispheres 103.9
2110 Male, age 80, left hemisphere 88.8
2827 Female, age 67, right hemisphere 71.5
Central amygdala
nTPM: 109.2
2826 Female, age 94, left hemisphere 119.2
2701 Female, age 91, right hemisphere 107.7
2515 Male, age 75, right hemisphere 107.6
1905 Male, age 76, both hemispheres 106.4
2239 Male, age 80, left hemisphere 105.4
Corticomedial amygdala
nTPM: 97.2
2829 Male, age 80, left hemisphere 118.0
2242 Female, age 91, right hemisphere 106.4
2429 Female, age 94, left hemisphere 96.3
2428 Male, age 75, right hemisphere 92.4
2535 Female, age 67, right hemisphere 87.3
2240 Male, age 76, both hemispheres 82.9
Lateral amygdala
nTPM: 97.0
2534 Female, age 94, left hemisphere 119.3
1883 Male, age 76, both hemispheres 112.3
2255 Female, age 91, right hemisphere 96.3
2256 Male, age 80, left hemisphere 93.3
2516 Male, age 75, right hemisphere 90.9
2830 Female, age 67, right hemisphere 69.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 118.7
Samples: 152

Max nTPM: 289.7
Min nTPM: 28.8
Std nTPM: 32.4
Median nTPM: 116.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 289.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 211.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 184.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 183.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 177.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 170.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 169.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 165.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 164.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 163.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 161.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 158.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 157.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 157.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 156.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 156.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 156.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 155.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 155.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 154.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 154.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 153.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 153.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 151.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 150.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 150.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 148.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 145.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 145.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 145.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 144.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 142.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 142.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 141.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 139.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 139.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 138.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 136.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 135.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 134.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 134.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 133.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 133.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 132.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 131.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 131.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 131.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 130.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 129.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 129.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 129.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 127.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 127.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 126.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 126.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 126.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 126.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 125.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 125.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 124.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 122.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 122.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 122.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 121.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 120.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 120.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 119.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 119.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 119.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 117.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 117.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 117.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 116.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 115.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 115.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 114.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 114.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 114.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 113.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 111.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 111.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 110.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 110.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 110.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 109.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 109.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 108.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 108.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 107.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 107.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 107.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 106.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 106.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 106.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 105.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 104.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 104.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 104.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 103.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 100.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 99.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 99.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 95.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 95.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 94.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 94.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 93.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 93.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 93.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 90.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 90.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 89.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 89.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 86.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 84.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 84.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 82.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 81.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 81.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 79.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 79.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 79.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 76.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 73.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 73.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 68.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 64.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 63.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 60.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 57.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 51.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 222.2
FF:10151-102I7 76 years, female 222.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.4
Pig sample Sample description nTPM
Amygdala
nTPM: 105.4
Samples: 4

Max nTPM: 149.7
Min nTPM: 78.7
Sample A Female 149.7
Sample B Female 78.7
Sample C Male 101.3
Sample D Male 91.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 196.3
Samples: 4

Max nTPM: 208.9
Min nTPM: 187.6
Sample A Male 208.9
Sample B Male 194.5
Sample C Female 194.3
Sample D Female 187.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.6
413811 Antisense, RP_040809_01_F07, Mouse strain C57BL/6J (56 days, male) 23.6

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