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  • CDIP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:117.6 nTPM
FANTOM5:241.9 Scaled Tags Per Million
Pig:105.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049352
Glial cells Medium
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 117.6
Samples: 246

Max nTPM: 193.6
Min nTPM: 55.7
Std nTPM: 24.8
Median nTPM: 117.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 193.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 176.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 176.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 176.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 171.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 170.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 166.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 166.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 165.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 164.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 163.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 161.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 159.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 157.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 156.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 156.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 155.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 155.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 154.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 152.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 152.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 151.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 151.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 149.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 149.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 149.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 148.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 148.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 148.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 146.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 146.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 145.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 145.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 145.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 144.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 144.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 144.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 144.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 144.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 144.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 143.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 143.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 142.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 142.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 141.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 140.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 140.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 139.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 139.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 138.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 138.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 137.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 137.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 137.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 136.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 136.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 136.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 136.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 136.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 136.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 135.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 134.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 134.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 134.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 134.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 134.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 133.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 133.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 133.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 133.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 132.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 132.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 131.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 131.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 130.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 129.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 129.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 128.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 127.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 127.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 127.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 127.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 126.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 126.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 126.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 126.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 126.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 126.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 125.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 125.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 124.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 124.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 124.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 124.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 124.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 123.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 123.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 123.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 123.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 123.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 122.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 122.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 122.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 121.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 121.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 121.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 121.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 121.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 121.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 121.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 120.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 120.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 120.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 120.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 120.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 119.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 119.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 119.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 118.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 118.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 118.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 118.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 117.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 117.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 117.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 116.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 116.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 115.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 115.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 114.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 114.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 114.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 114.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 114.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 114.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 114.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 114.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 113.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 112.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 112.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 111.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 111.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 110.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 110.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 110.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 110.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 110.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 109.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 109.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 108.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 108.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 108.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 108.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 108.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 108.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 108.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 108.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 108.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 107.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 107.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 106.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 105.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 105.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 105.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 105.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 104.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 104.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 103.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 103.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 103.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 102.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 102.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 102.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 102.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 102.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 101.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 100.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 100.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 100.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 100.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 100.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 99.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 99.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 99.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 98.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 98.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 97.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 97.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 97.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 97.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 96.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 96.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 96.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 95.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 95.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 95.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 94.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 93.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 93.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 93.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 93.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 93.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 93.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 93.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 92.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 92.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 91.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 91.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 91.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 91.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 91.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 89.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 89.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 89.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 89.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 88.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 88.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 87.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 87.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 87.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 86.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 86.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 85.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 85.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 84.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 84.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 84.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 83.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 83.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 83.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 82.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 81.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 79.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 78.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 78.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 77.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 76.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 76.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 74.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 65.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 65.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 64.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 61.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 60.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 55.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 241.9
FF:10164-103B2 76 years, female 241.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.1
Pig sample Sample description nTPM
Caudate
nTPM: 105.1
Samples: 4

Max nTPM: 128.6
Min nTPM: 87.7
Sample A Female 87.7
Sample B Female 113.0
Sample C Male 128.6
Sample D Male 91.0

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