We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MLF2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MLF2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:243.0 nTPM
HPA Brain:165.5 nTPM
GTEx:243.0 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:205.4 nTPM
Mouse:457.3 nTPM
Allen mouse:28.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.5
Sample id Sample description nTPM
Amygdala
nTPM: 161.8
2814 Male, age 76, right hemisphere 178.9
2514 Male, age 75, right hemisphere 159.8
2695 Female, age 67, right hemisphere 159.3
2517 Female, age 94, left hemisphere 158.3
1987 Female, age 91, left hemisphere 152.6
Basal amygdala
nTPM: 165.5
2685 Female, age 94, left hemisphere 199.5
2110 Male, age 80, left hemisphere 175.2
2243 Female, age 91, right hemisphere 174.3
2609 Male, age 75, right hemisphere 162.9
1955 Male, age 76, both hemispheres 161.7
2827 Female, age 67, right hemisphere 119.2
Central amygdala
nTPM: 161.0
2826 Female, age 94, left hemisphere 183.6
2239 Male, age 80, left hemisphere 168.6
1905 Male, age 76, both hemispheres 158.9
2701 Female, age 91, right hemisphere 147.8
2515 Male, age 75, right hemisphere 146.3
Corticomedial amygdala
nTPM: 159.0
2829 Male, age 80, left hemisphere 209.5
2242 Female, age 91, right hemisphere 169.8
2429 Female, age 94, left hemisphere 159.9
2240 Male, age 76, both hemispheres 158.2
2428 Male, age 75, right hemisphere 143.8
2535 Female, age 67, right hemisphere 112.8
Lateral amygdala
nTPM: 150.0
2534 Female, age 94, left hemisphere 181.2
1883 Male, age 76, both hemispheres 168.6
2516 Male, age 75, right hemisphere 151.0
2255 Female, age 91, right hemisphere 143.7
2256 Male, age 80, left hemisphere 134.0
2830 Female, age 67, right hemisphere 121.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 243.0
Samples: 152

Max nTPM: 504.5
Min nTPM: 107.1
Std nTPM: 61.0
Median nTPM: 225.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 504.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 417.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 416.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 407.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 404.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 391.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 373.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 366.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 342.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 335.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 332.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 331.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 330.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 326.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 322.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 320.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 319.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 314.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 312.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 312.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 306.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 306.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 303.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 301.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 300.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 298.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 294.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 290.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 289.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 288.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 287.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 287.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 284.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 280.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 279.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 276.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 275.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 275.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 274.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 272.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 270.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 269.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 269.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 264.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 264.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 263.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 258.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 257.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 256.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 255.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 254.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 254.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 254.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 254.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 253.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 251.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 250.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 248.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 247.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 247.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 246.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 246.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 245.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 242.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 242.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 239.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 237.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 237.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 236.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 234.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 230.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 230.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 228.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 226.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 226.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 225.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 225.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 225.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 225.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 224.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 224.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 224.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 223.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 223.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 222.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 222.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 222.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 221.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 221.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 220.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 220.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 219.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 219.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 218.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 218.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 217.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 217.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 217.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 216.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 216.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 215.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 215.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 214.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 211.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 211.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 210.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 210.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 209.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 208.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 208.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 207.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 207.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 206.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 204.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 203.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 203.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 202.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 201.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 200.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 200.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 199.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 199.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 199.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 195.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 195.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 194.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 190.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 189.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 189.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 188.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 185.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 182.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 182.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 178.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 178.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 177.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 177.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 176.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 175.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 173.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 172.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 172.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 168.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 161.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 156.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 149.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 148.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 146.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 145.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 107.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 101.2
FF:10151-102I7 76 years, female 101.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.4
Pig sample Sample description nTPM
Amygdala
nTPM: 205.5
Samples: 4

Max nTPM: 298.1
Min nTPM: 156.1
Sample A Female 298.1
Sample B Female 156.1
Sample C Male 174.8
Sample D Male 192.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

457.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 457.3
Samples: 4

Max nTPM: 485.8
Min nTPM: 445.1
Sample A Male 452.1
Sample B Male 445.1
Sample C Female 485.8
Sample D Female 446.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

28.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.5
513491 Antisense, RP_040810_01_H11, Mouse strain C57BL/6J (56 days, male) 28.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org