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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:162.1 nTPM
HPA Brain:159.0 nTPM
GTEx:162.1 nTPM
FANTOM5:66.4 Scaled Tags Per Million
Pig:255.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 135.3
2565 Male, age 75, midline 154.2
1981 Female, age 72, midline 145.2
2194 Female, age 79, both hemispheres 140.2
2816 Male, age 47, midline 123.9
2048 Male, age 55, midline 112.9
Cervical spinal cord, dorsal horn
nTPM: 159.0
2297 Male, age 75, both hemispheres 173.8
2173 Female, age 72, unknown 160.8
2069 Male, age 47, both hemispheres 157.9
2296 Male, age 66, both hemispheres 155.9
1877 Male, age 55, unknown 155.8
2721 Male, age 90, both hemispheres 149.9
Cervical spinal cord, ventral horn
nTPM: 140.7
2295 Male, age 66, both hemispheres 150.7
2098 Female, age 72, unknown 143.7
2480 Male, age 75, both hemispheres 141.9
2820 Female, age 79, both hemispheres 137.5
2068 Male, age 55, unknown 136.3
2809 Male, age 90, both hemispheres 134.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 162.1
Samples: 159

Max nTPM: 239.3
Min nTPM: 99.0
Std nTPM: 26.2
Median nTPM: 160.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 239.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 234.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 225.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 222.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 221.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 212.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 212.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 211.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 210.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 208.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 205.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 205.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 204.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 203.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 201.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 198.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 196.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 193.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 191.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 191.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 190.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 190.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 189.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 186.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 186.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 184.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 184.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 183.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 183.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 182.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 181.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 180.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 180.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 179.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 179.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 177.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 177.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 177.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 176.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 176.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 176.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 175.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 175.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 175.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 174.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 174.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 173.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 173.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 172.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 172.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 171.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 171.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 170.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 170.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 170.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 169.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 169.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 169.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 168.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 168.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 168.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 168.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 167.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 167.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 167.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 166.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 166.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 165.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 165.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 164.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 164.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 164.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 164.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 163.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 163.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 163.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 162.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 162.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 161.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 160.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 160.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 160.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 159.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 159.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 159.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 159.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 158.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 158.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 158.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 158.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 157.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 157.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 156.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 156.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 155.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 154.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 154.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 154.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 153.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 153.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 153.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 153.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 153.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 152.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 150.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 150.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 150.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 150.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 149.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 149.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 149.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 148.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 148.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 147.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 146.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 145.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 145.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 145.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 143.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 143.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 142.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 141.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 141.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 140.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 140.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 140.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 140.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 140.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 139.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 139.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 139.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 139.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 139.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 138.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 137.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 136.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 136.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 133.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 132.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 131.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 131.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 131.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 131.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 128.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 127.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 124.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 123.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 122.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 121.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 120.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 117.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 116.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 112.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 106.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 99.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 99.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 66.4
FF:10159-103A6 76 years, female 81.2
FF:10181-103D1 60 years, female 51.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 210.7
Samples: 4

Max nTPM: 228.2
Min nTPM: 194.1
Sample A Female 211.4
Sample B Female 194.1
Sample C Male 209.1
Sample D Male 228.2
Ventral spinal cord
nTPM: 255.4
Samples: 4

Max nTPM: 269.2
Min nTPM: 248.2
Sample A Female 248.2
Sample B Female 249.6
Sample C Male 269.2
Sample D Male 254.4

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