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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:336.8 nTPM
HPA Brain:146.2 nTPM
GTEx:336.8 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:127.1 nTPM
Allen mouse:0.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.2
Sample id Sample description nTPM
Amygdala
nTPM: 146.2
2814 Male, age 76, right hemisphere 181.1
2695 Female, age 67, right hemisphere 152.2
2514 Male, age 75, right hemisphere 139.6
2517 Female, age 94, left hemisphere 131.0
1987 Female, age 91, left hemisphere 127.0
Basal amygdala
nTPM: 111.4
2110 Male, age 80, left hemisphere 125.1
2609 Male, age 75, right hemisphere 124.2
2685 Female, age 94, left hemisphere 114.6
1955 Male, age 76, both hemispheres 111.4
2827 Female, age 67, right hemisphere 102.3
2243 Female, age 91, right hemisphere 90.8
Central amygdala
nTPM: 137.1
2826 Female, age 94, left hemisphere 176.2
1905 Male, age 76, both hemispheres 170.4
2515 Male, age 75, right hemisphere 136.3
2239 Male, age 80, left hemisphere 107.5
2701 Female, age 91, right hemisphere 95.3
Corticomedial amygdala
nTPM: 109.1
2428 Male, age 75, right hemisphere 144.3
2829 Male, age 80, left hemisphere 119.7
2429 Female, age 94, left hemisphere 107.7
2240 Male, age 76, both hemispheres 101.0
2242 Female, age 91, right hemisphere 92.7
2535 Female, age 67, right hemisphere 89.1
Lateral amygdala
nTPM: 126.9
2534 Female, age 94, left hemisphere 163.0
1883 Male, age 76, both hemispheres 155.2
2516 Male, age 75, right hemisphere 150.4
2830 Female, age 67, right hemisphere 111.4
2256 Male, age 80, left hemisphere 91.0
2255 Female, age 91, right hemisphere 90.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 336.8
Samples: 152

Max nTPM: 1530.5
Min nTPM: 150.0
Std nTPM: 153.1
Median nTPM: 301.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1530.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 909.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 857.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 766.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 682.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 658.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 643.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 625.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 546.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 544.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 543.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 487.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 481.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 474.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 472.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 460.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 447.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 440.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 428.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 427.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 427.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 417.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 411.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 408.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 405.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 404.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 403.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 395.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 388.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 386.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 384.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 383.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 378.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 376.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 370.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 368.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 365.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 364.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 360.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 359.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 357.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 354.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 349.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 349.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 344.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 343.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 343.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 340.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 339.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 339.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 338.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 337.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 336.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 335.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 335.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 334.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 333.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 331.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 329.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 327.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 324.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 324.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 322.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 322.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 321.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 321.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 320.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 315.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 313.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 312.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 312.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 312.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 312.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 312.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 302.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 301.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 300.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 299.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 299.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 298.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 296.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 296.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 295.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 295.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 293.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 289.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 289.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 286.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 282.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 281.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 281.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 280.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 280.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 279.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 278.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 278.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 277.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 276.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 275.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 271.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 270.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 270.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 266.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 265.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 264.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 260.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 258.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 257.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 256.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 256.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 256.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 255.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 255.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 254.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 252.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 252.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 251.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 250.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 250.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 250.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 248.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 247.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 247.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 245.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 244.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 244.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 241.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 239.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 238.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 238.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 236.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 235.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 233.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 233.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 232.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 226.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 226.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 225.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 225.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 225.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 224.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 224.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 221.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 220.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 208.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 199.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 196.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 196.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 185.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 182.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 177.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 150.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.7
FF:10151-102I7 76 years, female 56.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.1
Pig sample Sample description nTPM
Amygdala
nTPM: 34.1
Samples: 4

Max nTPM: 35.9
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 34.6
Sample C Male 34.2
Sample D Male 35.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 127.1
Samples: 4

Max nTPM: 167.7
Min nTPM: 103.9
Sample A Male 130.9
Sample B Male 105.9
Sample C Female 167.7
Sample D Female 103.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
70429309 Antisense, RP_050614_01_D09, Mouse strain C57BL/6J (56 days, male) 0.8

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