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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:307.3 nTPM
HPA Brain:195.9 nTPM
GTEx:307.3 nTPM
FANTOM5:58.7 Scaled Tags Per Million
Pig:36.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 166.0
1981 Female, age 72, midline 219.2
2565 Male, age 75, midline 164.8
2048 Male, age 55, midline 149.9
2194 Female, age 79, both hemispheres 148.9
2816 Male, age 47, midline 147.2
Cervical spinal cord, dorsal horn
nTPM: 171.9
2173 Female, age 72, unknown 267.6
2069 Male, age 47, both hemispheres 186.8
2296 Male, age 66, both hemispheres 169.0
1877 Male, age 55, unknown 161.3
2297 Male, age 75, both hemispheres 129.3
2721 Male, age 90, both hemispheres 117.2
Cervical spinal cord, ventral horn
nTPM: 195.9
2480 Male, age 75, both hemispheres 238.5
2098 Female, age 72, unknown 228.4
2809 Male, age 90, both hemispheres 206.6
2068 Male, age 55, unknown 197.3
2295 Male, age 66, both hemispheres 175.0
2820 Female, age 79, both hemispheres 129.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

307.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 307.3
Samples: 159

Max nTPM: 604.0
Min nTPM: 136.0
Std nTPM: 79.9
Median nTPM: 307.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 604.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 539.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 539.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 513.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 500.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 481.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 479.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 445.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 435.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 431.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 430.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 428.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 422.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 419.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 417.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 417.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 414.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 407.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 402.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 394.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 393.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 389.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 383.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 379.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 377.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 375.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 375.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 373.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 372.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 371.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 366.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 363.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 362.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 362.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 359.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 355.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 354.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 352.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 351.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 351.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 350.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 350.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 350.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 348.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 347.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 346.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 340.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 340.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 337.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 337.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 332.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 331.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 329.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 328.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 328.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 327.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 326.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 325.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 324.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 321.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 320.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 320.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 319.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 318.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 317.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 316.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 315.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 315.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 315.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 315.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 314.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 314.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 313.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 313.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 312.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 312.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 308.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 308.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 307.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 307.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 303.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 302.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 299.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 297.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 296.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 292.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 291.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 291.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 290.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 288.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 287.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 287.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 283.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 282.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 281.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 281.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 280.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 280.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 279.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 275.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 272.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 269.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 266.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 266.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 265.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 264.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 263.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 261.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 260.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 260.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 256.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 256.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 255.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 255.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 254.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 252.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 252.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 252.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 251.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 250.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 248.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 247.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 247.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 246.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 245.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 242.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 238.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 238.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 236.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 235.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 234.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 231.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 230.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 226.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 226.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 224.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 223.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 221.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 220.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 220.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 218.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 215.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 215.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 215.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 214.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 213.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 211.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 211.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 209.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 206.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 204.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 204.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 203.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 187.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 186.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 168.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 143.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 143.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 136.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 58.7
FF:10181-103D1 60 years, female 75.4
FF:10159-103A6 76 years, female 42.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 30.6
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.6
Sample A Female 34.7
Sample B Female 29.2
Sample C Male 27.6
Sample D Male 30.9
Ventral spinal cord
nTPM: 36.3
Samples: 4

Max nTPM: 38.8
Min nTPM: 33.5
Sample A Female 38.5
Sample B Female 38.8
Sample C Male 33.5
Sample D Male 34.4

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