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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:73.9 nTPM
HPA Brain:103.6 nTPM
GTEx:73.9 nTPM
FANTOM5:145.6 Scaled Tags Per Million
Pig:91.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 94.4
2565 Male, age 75, midline 110.1
1981 Female, age 72, midline 108.9
2194 Female, age 79, both hemispheres 97.6
2816 Male, age 47, midline 78.5
2048 Male, age 55, midline 77.0
Cervical spinal cord, dorsal horn
nTPM: 103.6
2296 Male, age 66, both hemispheres 145.1
2173 Female, age 72, unknown 122.8
2069 Male, age 47, both hemispheres 104.7
2297 Male, age 75, both hemispheres 90.2
2721 Male, age 90, both hemispheres 81.7
1877 Male, age 55, unknown 77.4
Cervical spinal cord, ventral horn
nTPM: 89.8
2480 Male, age 75, both hemispheres 100.6
2098 Female, age 72, unknown 100.2
2068 Male, age 55, unknown 95.3
2809 Male, age 90, both hemispheres 88.8
2820 Female, age 79, both hemispheres 86.2
2295 Male, age 66, both hemispheres 67.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 73.9
Samples: 159

Max nTPM: 144.8
Min nTPM: 48.0
Std nTPM: 13.4
Median nTPM: 73.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 144.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 109.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 106.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 104.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 104.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 100.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 100.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 99.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 97.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 94.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 93.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 90.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 89.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 89.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 89.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 88.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 88.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 88.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 87.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 87.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 87.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 87.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 86.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 86.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 86.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 86.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 86.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 85.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 85.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 85.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 84.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 82.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 82.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 82.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 81.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 81.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 81.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 80.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 80.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 80.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 80.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 80.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 80.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 80.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 80.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 79.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 79.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 79.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 79.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 79.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 79.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 79.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 79.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 79.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 78.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 78.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 77.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 77.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 77.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 77.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 76.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 76.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 76.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 76.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 76.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 76.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 75.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 75.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 75.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 75.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 75.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 74.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 74.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 74.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 73.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 73.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 73.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 73.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 72.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 72.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 72.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 72.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 72.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 72.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 71.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 71.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 71.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 70.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 69.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 69.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 69.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 69.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 69.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 69.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 68.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 68.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 68.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 68.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 68.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 67.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 67.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 67.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 67.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 66.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 66.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 66.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 66.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 66.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 66.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 66.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 65.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 65.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 65.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 65.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 65.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 65.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 65.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 65.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 65.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 65.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 64.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 63.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 63.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 63.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 63.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 62.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 62.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 62.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 62.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 61.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 61.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 60.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 60.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 60.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 60.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 60.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 59.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 59.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 58.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 58.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 57.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 57.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 57.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 56.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 55.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 55.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 55.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 54.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 52.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 52.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 52.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 48.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 48.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 48.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

145.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 145.6
FF:10181-103D1 60 years, female 148.0
FF:10159-103A6 76 years, female 143.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.3
Samples: 4

Max nTPM: 92.5
Min nTPM: 64.8
Sample A Female 86.7
Sample B Female 64.8
Sample C Male 65.1
Sample D Male 92.5
Ventral spinal cord
nTPM: 91.9
Samples: 4

Max nTPM: 95.0
Min nTPM: 85.0
Sample A Female 95.0
Sample B Female 93.2
Sample C Male 94.5
Sample D Male 85.0

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