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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:205.3 nTPM
GTEx:331.7 nTPM
FANTOM5:383.8 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001527Antibody HPA005692Antibody CAB009538
Glial cells LowNot detectedNot detected
Neuronal cells LowNot detectedNot detected






HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.3
Sample id Sample description nTPM
Hippocampus
nTPM: 205.3
1911 Female, age 85, right hemisphere 311.0
1898 Male, age 80, left hemisphere 225.8
2621 Female, age 67, right hemisphere 193.1
2529 Female, age 94, left hemisphere 190.1
2148 Female, age 91, left hemisphere 164.0
1855 Male, age 76, left hemisphere 147.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

331.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 331.7
Samples: 197

Max nTPM: 1316.9
Min nTPM: 17.0
Std nTPM: 242.1
Median nTPM: 268.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1316.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 1079.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1049.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1039.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1022.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 988.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 923.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 883.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 868.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 857.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 842.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 790.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 777.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 757.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 750.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 721.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 715.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 685.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 671.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 668.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 642.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 639.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 636.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 605.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 604.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 590.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 577.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 558.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 554.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 552.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 550.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 545.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 542.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 538.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 533.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 516.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 514.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 513.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 509.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 506.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 495.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 494.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 491.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 490.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 490.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 486.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 482.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 477.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 473.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 471.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 462.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 449.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 445.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 438.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 431.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 417.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 415.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 413.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 412.5
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 408.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 407.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 403.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 401.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 396.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 396.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 392.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 391.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 384.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 381.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 368.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 366.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 366.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 364.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 363.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 346.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 343.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 342.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 341.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 341.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 330.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 323.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 323.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 318.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 316.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 307.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 303.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 299.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 299.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 291.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 291.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 286.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 285.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 279.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 279.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 278.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 275.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 270.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 269.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 268.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 266.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 263.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 256.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 256.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 254.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 249.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 243.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 242.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 242.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 241.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 241.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 237.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 234.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 234.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 232.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 232.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 231.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 226.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 221.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 220.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 219.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 206.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 206.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 205.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 204.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 203.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 198.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 196.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 187.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 173.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 173.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 172.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 172.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 171.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 171.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 170.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 168.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 162.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 161.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 161.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 158.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 157.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 153.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 153.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 152.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 151.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 149.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 149.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 148.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 147.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 145.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 142.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 140.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 137.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 136.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 136.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 132.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 131.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 129.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 127.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 125.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 125.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 125.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 122.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 122.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 119.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 118.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 118.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 116.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 113.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 111.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 109.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 105.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 105.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 99.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 91.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 90.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 88.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 87.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 81.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 80.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 77.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 77.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 76.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 74.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 66.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 65.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 63.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 63.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 59.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 55.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 48.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 47.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 42.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 32.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 29.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 26.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 17.0
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

383.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 383.8
FF:10153-102I9 76 years, female 418.6
FF:10169-103B7 60 years, female 348.9

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