MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:463.8 nTPM
HPA Brain:729.3 nTPM
GTEx:463.8 nTPM
FANTOM5:2002.3 Scaled Tags Per Million
Pig:1145.1 nTPM
Mouse:683.9 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 729.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 591.8
2411 Female, age 72, unknown 1101.6
2019 Male, age 18, unknown 823.1
1870 Female, age 42, unknown 796.8
1830 Male, age 51, unknown 761.7
1833 Male, age 53, unknown 643.5
2828 Female, age 72, unknown 557.4
1827 Male, age 72, unknown 394.6
2219 Male, age 76, both hemispheres 371.6
2666 Male, age 74, left hemisphere 256.2
2586 Male, age 75, left hemisphere 211.8
Dorsal raphe nucleus
nTPM: 521.1
2750 Male, age 76, both hemispheres 1078.4
2016 Female, age 72, unknown 475.7
1828 Male, age 53, unknown 419.2
2298 Female, age 72, unknown 358.1
2047 Male, age 72, unknown 273.9
Inferior colliculus
nTPM: 344.0
1848 Female, age 42, unknown 396.8
1890 Male, age 53, unknown 385.6
2097 Female, age 72, unknown 329.0
2849 Male, age 72, unknown 264.7
Median raphe nucleus
nTPM: 471.0
2220 Male, age 76, midline 471.0
Periaquaductal grey, anterior
nTPM: 284.7
2502 Female, age 75, unknown 320.4
1947 Male, age 18, unknown 303.3
1795 Male, age 51, unknown 230.4
Periaquaductal grey, dorsal
nTPM: 233.1
2464 Female, age 72, unknown 453.1
1831 Male, age 72, unknown 251.6
1840 Male, age 53, unknown 120.4
2850 Male, age 76, both hemispheres 107.4
Periaquaductal grey, lateral
nTPM: 304.4
2272 Male, age 74, both hemispheres 420.3
2053 Male, age 18, unknown 360.9
2140 Male, age 76, both hemispheres 131.9
Pretectal area
nTPM: 367.3
2316 Male, age 76, right hemisphere 529.9
2273 Male, age 74, both hemispheres 477.7
1815 Male, age 53, unknown 457.2
2407 Male, age 75, both hemispheres 410.6
2007 Male, age 72, unknown 382.7
1817 Female, age 42, unknown 371.4
2667 Female, age 75, unknown 367.9
2825 Male, age 18, unknown 337.7
2224 Female, age 72, unknown 317.8
1944 Female, age 72, unknown 221.2
1816 Male, age 51, unknown 166.5
Red nucleus
nTPM: 729.3
1821 Female, age 72, unknown 1033.9
1865 Male, age 51, unknown 906.5
1904 Male, age 53, unknown 856.2
2823 Male, age 76, right hemisphere 839.7
2769 Male, age 72, unknown 824.3
2227 Male, age 72, unknown 823.8
2785 Male, age 18, unknown 763.1
2503 Female, age 72, unknown 697.1
1954 Female, age 42, unknown 684.1
2588 Male, age 74, left hemisphere 497.0
2725 Female, age 75, unknown 461.6
2584 Male, age 75, left hemisphere 364.7
Substantia nigra
nTPM: 365.8
1851 Male, age 51, unknown 481.6
1889 Female, age 72, unknown 466.3
2590 Female, age 75, unknown 416.3
2409 Female, age 72, unknown 392.8
1941 Male, age 53, unknown 387.6
2241 Male, age 72, unknown 365.9
1916 Female, age 42, unknown 360.0
2583 Male, age 75, right hemisphere 349.1
2699 Male, age 18, unknown 260.1
2665 Male, age 74, both hemispheres 178.1
Superior colliculus
nTPM: 418.3
1913 Female, age 42, unknown 586.9
1895 Male, age 76, right hemisphere 585.5
2587 Male, age 74, left hemisphere 575.6
1995 Male, age 72, unknown 555.8
1839 Male, age 51, unknown 440.5
2668 Female, age 75, unknown 418.6
1796 Male, age 53, unknown 348.7
2087 Female, age 72, unknown 268.1
2261 Male, age 18, unknown 223.4
2664 Male, age 75, both hemispheres 180.1
Ventral tegmental area
nTPM: 571.2
2223 Female, age 72, unknown 1025.5
2410 Female, age 72, unknown 689.4
1942 Male, age 51, unknown 472.5
2021 Male, age 53, unknown 438.1
2218 Male, age 76, both hemispheres 411.0
1915 Female, age 42, unknown 391.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 463.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 463.8
Samples: 139

Max nTPM: 2326.6
Min nTPM: 129.9
Std nTPM: 308.6
Median nTPM: 381.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2326.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1463.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1306.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1290.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1232.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1184.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1181.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 1125.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 1038.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 893.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 886.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2002.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2002.3
FF:10158-103A5 76 years, female 2002.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1145.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 840.9
Samples: 4

Max nTPM: 1439.4
Min nTPM: 446.9
Sample A Female 884.7
Sample B Female 446.9
Sample C Male 592.7
Sample D Male 1439.4
Midbrain
nTPM: 1145.1
Samples: 4

Max nTPM: 2998.7
Min nTPM: 401.8
Sample A Female 2998.7
Sample B Female 761.6
Sample C Male 418.4
Sample D Male 401.8
Periaqueductal gray
nTPM: 474.8
Samples: 3

Max nTPM: 652.7
Min nTPM: 329.7
Sample B Female 652.7
Sample C Male 329.7
Sample D Male 442.1
Superior colliculi
nTPM: 657.4
Samples: 4

Max nTPM: 805.9
Min nTPM: 328.7
Sample A Female 805.9
Sample B Female 328.7
Sample C Male 714.2
Sample D Male 780.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 683.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 683.9
Samples: 4

Max nTPM: 723.2
Min nTPM: 629.5
Sample A Male 670.4
Sample B Male 629.5
Sample C Female 723.2
Sample D Female 712.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68795444 Antisense, RP_041130_01_F08, Mouse strain C57BL/6J (56 days, male) 2.8

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