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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1466.9 nTPM
HPA Brain:939.9 nTPM
GTEx:1466.9 nTPM
FANTOM5:1984.2 Scaled Tags Per Million
Pig:1692.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

939.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 707.3
1981 Female, age 72, midline 1072.4
2048 Male, age 55, midline 746.4
2816 Male, age 47, midline 701.2
2194 Female, age 79, both hemispheres 665.8
2565 Male, age 75, midline 350.7
Cervical spinal cord, dorsal horn
nTPM: 939.9
2296 Male, age 66, both hemispheres 1824.3
2173 Female, age 72, unknown 1549.6
2069 Male, age 47, both hemispheres 934.9
1877 Male, age 55, unknown 674.1
2297 Male, age 75, both hemispheres 350.1
2721 Male, age 90, both hemispheres 306.4
Cervical spinal cord, ventral horn
nTPM: 781.1
2098 Female, age 72, unknown 1063.8
2068 Male, age 55, unknown 1029.7
2809 Male, age 90, both hemispheres 693.1
2820 Female, age 79, both hemispheres 671.2
2480 Male, age 75, both hemispheres 618.3
2295 Male, age 66, both hemispheres 610.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1466.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1466.9
Samples: 159

Max nTPM: 3742.0
Min nTPM: 167.9
Std nTPM: 694.7
Median nTPM: 1361.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3742.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 3405.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3180.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3114.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3091.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 2775.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2727.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2717.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 2666.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 2619.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 2611.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 2567.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2560.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 2506.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2494.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2459.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 2457.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2444.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2408.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2401.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 2355.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 2349.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2311.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2286.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2280.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2268.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2209.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 2182.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2159.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2141.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2118.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 2088.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2071.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 2033.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2032.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2023.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1995.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1995.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1989.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1977.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1891.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1871.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1785.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1783.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1750.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1717.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1712.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1674.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1670.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1669.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1660.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1656.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1646.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1638.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1620.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1599.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1593.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1586.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1577.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1575.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1561.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1552.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1530.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1523.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1511.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1497.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1493.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1489.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1470.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1458.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1448.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1431.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1423.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1423.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1417.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1408.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1401.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1376.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1368.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1361.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1360.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1360.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1350.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1327.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1320.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1319.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1285.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1266.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1264.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1262.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1256.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1248.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1227.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1190.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1187.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1185.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1177.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1176.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1167.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1147.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1146.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1137.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1136.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1134.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1133.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1120.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1110.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1087.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1066.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1060.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1056.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1054.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1047.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1039.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1032.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1031.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1027.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1014.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1014.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1004.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 990.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 990.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 983.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 974.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 957.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 955.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 931.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 897.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 852.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 796.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 791.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 790.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 759.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 756.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 743.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 721.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 718.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 692.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 681.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 665.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 663.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 648.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 645.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 638.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 607.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 605.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 551.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 524.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 512.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 511.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 494.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 465.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 416.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 412.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 408.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 397.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 394.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 338.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 167.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1984.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1984.2
FF:10181-103D1 60 years, female 2470.1
FF:10159-103A6 76 years, female 1498.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1692.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1305.9
Samples: 4

Max nTPM: 1469.9
Min nTPM: 1128.1
Sample A Female 1469.9
Sample B Female 1359.4
Sample C Male 1128.1
Sample D Male 1266.3
Ventral spinal cord
nTPM: 1692.9
Samples: 4

Max nTPM: 2043.8
Min nTPM: 1261.3
Sample A Female 1840.7
Sample B Female 1625.9
Sample C Male 1261.3
Sample D Male 2043.8

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