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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:61.3 nTPM
HPA Brain:37.9 nTPM
GTEx:61.3 nTPM
FANTOM5:95.6 Scaled Tags Per Million
Pig:29.3 nTPM
Mouse:81.8 nTPM
Allen mouse:12.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.9
Sample id Sample description nTPM
Amygdala
nTPM: 37.9
2814 Male, age 76, right hemisphere 42.1
2514 Male, age 75, right hemisphere 40.8
2695 Female, age 67, right hemisphere 37.0
1987 Female, age 91, left hemisphere 35.9
2517 Female, age 94, left hemisphere 33.6
Basal amygdala
nTPM: 33.8
2609 Male, age 75, right hemisphere 36.9
1955 Male, age 76, both hemispheres 36.4
2243 Female, age 91, right hemisphere 34.6
2110 Male, age 80, left hemisphere 33.0
2685 Female, age 94, left hemisphere 32.2
2827 Female, age 67, right hemisphere 29.9
Central amygdala
nTPM: 37.3
1905 Male, age 76, both hemispheres 44.0
2826 Female, age 94, left hemisphere 40.4
2239 Male, age 80, left hemisphere 35.5
2515 Male, age 75, right hemisphere 34.9
2701 Female, age 91, right hemisphere 31.4
Corticomedial amygdala
nTPM: 34.5
2829 Male, age 80, left hemisphere 38.8
2242 Female, age 91, right hemisphere 38.3
2428 Male, age 75, right hemisphere 34.6
2240 Male, age 76, both hemispheres 33.7
2429 Female, age 94, left hemisphere 32.4
2535 Female, age 67, right hemisphere 29.5
Lateral amygdala
nTPM: 33.5
1883 Male, age 76, both hemispheres 42.6
2516 Male, age 75, right hemisphere 35.9
2534 Female, age 94, left hemisphere 33.9
2830 Female, age 67, right hemisphere 32.5
2255 Female, age 91, right hemisphere 29.9
2256 Male, age 80, left hemisphere 26.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 61.3
Samples: 152

Max nTPM: 153.2
Min nTPM: 31.8
Std nTPM: 18.8
Median nTPM: 58.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 153.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 133.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 130.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 124.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 118.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 102.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 99.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 97.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 90.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 86.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 86.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 84.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 84.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 82.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 81.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 81.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 80.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 80.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 79.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 77.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 77.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 76.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 76.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 75.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 74.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 73.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 73.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 72.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 72.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 71.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 71.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 70.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 69.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 69.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 68.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 67.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 67.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 67.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 67.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 65.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 64.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 64.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 64.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 64.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 64.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 63.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 63.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 63.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 63.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 63.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 63.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 63.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 62.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 62.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 62.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 62.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 62.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 62.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 62.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 61.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 61.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 61.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 60.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 60.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 60.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 60.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 59.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 59.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 58.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 58.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 58.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 58.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 58.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 58.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 56.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 56.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 56.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 56.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 56.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 56.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 56.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 55.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 55.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 55.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 54.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 54.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 54.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 54.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 54.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 53.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 53.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 53.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 53.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 53.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 52.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 52.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 52.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 52.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 51.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 51.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 50.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 50.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 49.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 49.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 48.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 48.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 48.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 48.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 47.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 47.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 47.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 47.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 47.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 47.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 47.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 46.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 46.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 46.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 46.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 46.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 46.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 45.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 44.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 44.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 44.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 44.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 44.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 44.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 43.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 42.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 39.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 39.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 38.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 37.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 37.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 35.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 33.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 32.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

95.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 95.6
FF:10151-102I7 76 years, female 95.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.3
Pig sample Sample description nTPM
Amygdala
nTPM: 29.3
Samples: 4

Max nTPM: 35.5
Min nTPM: 25.9
Sample A Female 35.5
Sample B Female 28.0
Sample C Male 25.9
Sample D Male 27.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 81.8
Samples: 4

Max nTPM: 88.5
Min nTPM: 78.5
Sample A Male 88.5
Sample B Male 80.4
Sample C Female 79.6
Sample D Female 78.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.6
69014949 Antisense, RP_050310_02_A09, Mouse strain C57BL/6J (56 days, male) 12.6

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