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PSME1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:205.7 nTPM
HPA:129.3 nTPM
GTEx:205.7 nTPM
FANTOM5:527.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006632
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.3
overview
Male, age 65
Small intestine sample 232
nTPM: 137.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 125.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 124.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 129.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 205.7
Samples: 187

Max nTPM: 382.5
Min nTPM: 97.3
Std nTPM: 56.4
Median nTPM: 199.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 382.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 381.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 363.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 353.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 352.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 344.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 336.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 324.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 322.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 307.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 294.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 289.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 287.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 287.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 286.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 284.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 279.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 279.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 277.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 274.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 273.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 272.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 272.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 267.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 265.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 265.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 263.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 263.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 262.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 261.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 260.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 259.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 257.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 255.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 250.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 250.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 248.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 248.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 248.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 246.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 244.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 243.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 243.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 242.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 242.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 238.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 237.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 237.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 237.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 235.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 232.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 231.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 230.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 230.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 230.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 227.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 227.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 225.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 225.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 225.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 223.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 223.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 223.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 223.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 222.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 221.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 221.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 221.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 220.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 220.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 220.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 216.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 216.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 215.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 214.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 214.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 214.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 213.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 210.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 210.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 208.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 207.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 206.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 206.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 206.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 206.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 205.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 204.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 204.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 203.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 201.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 200.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 200.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 199.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 198.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 197.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 197.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 197.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 196.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 196.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 194.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 194.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 194.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 194.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 193.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 192.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 192.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 192.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 191.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 190.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 189.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 188.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 188.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 188.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 187.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 186.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 186.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 185.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 184.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 184.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 183.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 182.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 182.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 181.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 180.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 180.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 179.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 177.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 176.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 175.1
GTEX-1192X-2526-SM-59868 50-59 years, male 174.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 173.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 173.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 171.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 170.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 169.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 168.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 166.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 166.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 164.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 164.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 164.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 163.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 163.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 163.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 163.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 163.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 162.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 161.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 161.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 157.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 156.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 155.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 154.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 153.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 150.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 149.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 147.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 147.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 146.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 146.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 146.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 145.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 142.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 142.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 142.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 140.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 138.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 135.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 135.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 134.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 129.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 127.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 126.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 124.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 123.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 122.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 121.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 121.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 120.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 118.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 111.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 110.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 105.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 104.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 97.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 97.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

527.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 527.5
FF:10024-101D6 15,40,85 years, mixed 527.5

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