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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:79.0 nTPM
HPA Brain:24.4 nTPM
GTEx:79.0 nTPM
FANTOM5:141.9 Scaled Tags Per Million
Pig:76.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 19.3
1981 Female, age 72, midline 27.6
2816 Male, age 47, midline 17.7
2048 Male, age 55, midline 17.5
2565 Male, age 75, midline 16.9
2194 Female, age 79, both hemispheres 16.7
Cervical spinal cord, dorsal horn
nTPM: 24.4
2069 Male, age 47, both hemispheres 29.0
2297 Male, age 75, both hemispheres 27.5
2173 Female, age 72, unknown 24.1
2296 Male, age 66, both hemispheres 23.4
1877 Male, age 55, unknown 22.5
2721 Male, age 90, both hemispheres 19.7
Cervical spinal cord, ventral horn
nTPM: 22.1
2098 Female, age 72, unknown 37.3
2809 Male, age 90, both hemispheres 28.7
2480 Male, age 75, both hemispheres 19.9
2295 Male, age 66, both hemispheres 18.2
2068 Male, age 55, unknown 17.4
2820 Female, age 79, both hemispheres 11.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 79.0
Samples: 159

Max nTPM: 130.7
Min nTPM: 50.2
Std nTPM: 16.9
Median nTPM: 76.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 130.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 130.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 127.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 121.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 119.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 117.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 113.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 112.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 111.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 110.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 107.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 106.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 105.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 102.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 101.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 100.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 99.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 99.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 99.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 98.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 98.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 97.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 96.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 95.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 95.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 93.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 93.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 92.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 92.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 92.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 91.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 90.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 89.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 89.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 89.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 88.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 87.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 87.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 87.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 87.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 86.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 86.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 85.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 85.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 84.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 84.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 84.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 84.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 83.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 83.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 83.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 83.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 83.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 83.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 82.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 82.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 82.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 82.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 81.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 81.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 80.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 80.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 79.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 79.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 79.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 79.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 78.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 78.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 77.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 77.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 77.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 77.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 77.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 77.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 76.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 76.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 76.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 76.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 76.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 76.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 76.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 76.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 76.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 75.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 75.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 75.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 74.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 74.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 74.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 74.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 73.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 73.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 73.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 73.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 73.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 73.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 73.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 73.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 72.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 72.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 71.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 71.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 71.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 70.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 70.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 69.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 69.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 69.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 68.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 68.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 68.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 67.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 67.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 67.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 67.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 67.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 66.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 66.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 66.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 65.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 64.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 64.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 64.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 64.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 64.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 63.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 63.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 63.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 63.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 62.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 62.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 61.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 61.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 60.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 60.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 59.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 59.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 59.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 57.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 56.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 56.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 56.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 55.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 55.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 54.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 53.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 52.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 52.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 51.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 50.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 50.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 141.9
FF:10181-103D1 60 years, female 154.3
FF:10159-103A6 76 years, female 129.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 76.6
Samples: 4

Max nTPM: 92.2
Min nTPM: 64.9
Sample A Female 64.9
Sample B Female 77.0
Sample C Male 92.2
Sample D Male 72.1
Ventral spinal cord
nTPM: 66.9
Samples: 4

Max nTPM: 81.4
Min nTPM: 56.2
Sample A Female 56.2
Sample B Female 60.7
Sample C Male 69.3
Sample D Male 81.4

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