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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:245.8 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:233.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051075Antibody CAB005223Antibody CAB075755Antibody CAB075756
Glial cells LowHighLowNot detected
Neuronal cells HighHighHighHigh









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 245.8
Samples: 246

Max nTPM: 409.1
Min nTPM: 169.8
Std nTPM: 38.1
Median nTPM: 235.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 409.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 383.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 374.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 364.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 358.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 353.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 339.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 333.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 325.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 322.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 322.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 317.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 314.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 313.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 309.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 307.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 306.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 305.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 304.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 302.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 302.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 301.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 300.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 298.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 297.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 297.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 297.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 296.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 291.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 290.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 290.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 289.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 288.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 285.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 285.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 283.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 283.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 282.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 281.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 280.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 280.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 279.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 279.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 278.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 277.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 277.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 276.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 275.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 275.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 274.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 273.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 273.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 272.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 271.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 271.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 270.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 270.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 269.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 268.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 267.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 265.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 265.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 265.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 265.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 264.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 264.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 263.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 263.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 262.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 262.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 261.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 259.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 259.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 259.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 258.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 258.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 257.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 256.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 256.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 255.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 255.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 254.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 254.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 253.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 253.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 252.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 252.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 251.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 250.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 250.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 249.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 249.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 247.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 247.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 247.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 247.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 247.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 247.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 247.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 246.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 246.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 246.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 246.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 244.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 244.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 244.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 243.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 241.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 241.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 241.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 239.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 238.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 238.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 238.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 238.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 238.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 237.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 237.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 236.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 236.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 236.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 236.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 235.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 235.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 235.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 235.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 235.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 234.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 234.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 234.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 233.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 233.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 233.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 233.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 233.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 232.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 232.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 232.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 231.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 230.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 230.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 230.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 229.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 229.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 229.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 229.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 228.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 228.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 228.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 228.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 228.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 227.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 227.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 227.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 227.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 227.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 226.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 226.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 226.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 225.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 225.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 225.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 225.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 225.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 225.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 224.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 224.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 224.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 224.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 224.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 223.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 223.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 223.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 223.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 223.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 223.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 222.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 221.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 221.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 221.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 221.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 221.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 220.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 220.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 220.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 220.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 219.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 219.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 219.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 218.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 218.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 218.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 218.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 218.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 217.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 217.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 216.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 216.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 216.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 215.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 215.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 215.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 215.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 214.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 213.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 213.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 213.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 213.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 213.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 212.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 211.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 211.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 210.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 210.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 210.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 209.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 209.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 209.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 209.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 208.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 207.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 207.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 206.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 206.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 206.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 205.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 205.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 203.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 202.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 201.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 200.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 199.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 198.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 197.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 196.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 195.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 195.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 194.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 194.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 191.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 190.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 188.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 185.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 179.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 173.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 169.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.4
FF:10164-103B2 76 years, female 17.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.9
Pig sample Sample description nTPM
Caudate
nTPM: 234.0
Samples: 4

Max nTPM: 248.2
Min nTPM: 212.5
Sample A Female 248.2
Sample B Female 233.7
Sample C Male 241.4
Sample D Male 212.5

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