MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.4 nTPM
HPA Brain:108.3 nTPM
GTEx:34.4 nTPM
FANTOM5:69.2 Scaled Tags Per Million
Pig:61.8 nTPM
Mouse:9.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 108.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.6
2828 Female, age 72, unknown 105.8
2586 Male, age 75, left hemisphere 72.9
1827 Male, age 72, unknown 72.4
1870 Female, age 42, unknown 70.7
2666 Male, age 74, left hemisphere 56.1
1833 Male, age 53, unknown 47.8
1830 Male, age 51, unknown 45.7
2411 Female, age 72, unknown 40.2
2219 Male, age 76, both hemispheres 33.4
2019 Male, age 18, unknown 30.7
Dorsal raphe nucleus
nTPM: 75.0
2016 Female, age 72, unknown 114.4
1828 Male, age 53, unknown 85.6
2298 Female, age 72, unknown 81.5
2047 Male, age 72, unknown 55.7
2750 Male, age 76, both hemispheres 37.8
Inferior colliculus
nTPM: 69.2
1848 Female, age 42, unknown 78.3
2849 Male, age 72, unknown 76.5
2097 Female, age 72, unknown 66.6
1890 Male, age 53, unknown 55.5
Median raphe nucleus
nTPM: 53.5
2220 Male, age 76, midline 53.5
Periaquaductal grey, anterior
nTPM: 81.7
1795 Male, age 51, unknown 96.2
2502 Female, age 75, unknown 79.1
1947 Male, age 18, unknown 69.8
Periaquaductal grey, dorsal
nTPM: 96.1
2850 Male, age 76, both hemispheres 115.1
1840 Male, age 53, unknown 100.4
1831 Male, age 72, unknown 92.8
2464 Female, age 72, unknown 76.2
Periaquaductal grey, lateral
nTPM: 108.3
2140 Male, age 76, both hemispheres 123.1
2053 Male, age 18, unknown 115.0
2272 Male, age 74, both hemispheres 86.9
Pretectal area
nTPM: 73.7
2273 Male, age 74, both hemispheres 107.1
2224 Female, age 72, unknown 93.8
2825 Male, age 18, unknown 90.3
2667 Female, age 75, unknown 79.9
1944 Female, age 72, unknown 78.5
1816 Male, age 51, unknown 76.7
2316 Male, age 76, right hemisphere 69.1
1815 Male, age 53, unknown 63.2
2407 Male, age 75, both hemispheres 62.4
1817 Female, age 42, unknown 56.0
2007 Male, age 72, unknown 34.1
Red nucleus
nTPM: 51.9
2725 Female, age 75, unknown 70.5
2503 Female, age 72, unknown 69.9
2769 Male, age 72, unknown 60.7
2227 Male, age 72, unknown 59.8
1954 Female, age 42, unknown 57.7
1821 Female, age 72, unknown 50.1
2823 Male, age 76, right hemisphere 47.5
1865 Male, age 51, unknown 45.9
1904 Male, age 53, unknown 45.9
2588 Male, age 74, left hemisphere 42.2
2584 Male, age 75, left hemisphere 38.6
2785 Male, age 18, unknown 33.6
Substantia nigra
nTPM: 56.9
2699 Male, age 18, unknown 106.2
1916 Female, age 42, unknown 63.0
1851 Male, age 51, unknown 60.5
2590 Female, age 75, unknown 53.3
2583 Male, age 75, right hemisphere 52.1
2409 Female, age 72, unknown 50.9
1889 Female, age 72, unknown 48.8
1941 Male, age 53, unknown 46.4
2241 Male, age 72, unknown 46.3
2665 Male, age 74, both hemispheres 41.1
Superior colliculus
nTPM: 75.9
1995 Male, age 72, unknown 109.9
1796 Male, age 53, unknown 87.8
2261 Male, age 18, unknown 84.5
1913 Female, age 42, unknown 84.4
2664 Male, age 75, both hemispheres 80.1
2087 Female, age 72, unknown 74.5
1839 Male, age 51, unknown 72.1
2587 Male, age 74, left hemisphere 67.9
2668 Female, age 75, unknown 49.7
1895 Male, age 76, right hemisphere 48.5
Ventral tegmental area
nTPM: 60.4
2021 Male, age 53, unknown 79.2
1915 Female, age 42, unknown 69.3
1942 Male, age 51, unknown 56.0
2223 Female, age 72, unknown 54.8
2410 Female, age 72, unknown 52.6
2218 Male, age 76, both hemispheres 50.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.4
Samples: 139

Max nTPM: 87.8
Min nTPM: 4.4
Std nTPM: 16.9
Median nTPM: 31.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 87.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 82.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 78.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 74.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 73.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 70.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 69.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 67.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 64.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 64.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 59.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.2
FF:10158-103A5 76 years, female 69.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.3
Samples: 4

Max nTPM: 41.7
Min nTPM: 32.9
Sample A Female 37.4
Sample B Female 41.7
Sample C Male 33.0
Sample D Male 32.9
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 69.6
Min nTPM: 20.0
Sample A Female 69.6
Sample B Female 31.4
Sample C Male 43.3
Sample D Male 20.0
Periaqueductal gray
nTPM: 49.3
Samples: 3

Max nTPM: 53.1
Min nTPM: 42.3
Sample B Female 42.3
Sample C Male 52.6
Sample D Male 53.1
Superior colliculi
nTPM: 61.8
Samples: 4

Max nTPM: 126.0
Min nTPM: 31.9
Sample A Female 47.6
Sample B Female 126.0
Sample C Male 41.6
Sample D Male 31.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.7
Sample A Male 10.4
Sample B Male 8.7
Sample C Female 9.0
Sample D Female 10.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
2715 Antisense, RP_Baylor_103103, Mouse strain C57BL/6J (56 days, male) 0.1
2716 Antisense, RP_Baylor_103103, Mouse strain C57BL/6J (56 days, male) 0.0

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