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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:249.9 nTPM
HPA:249.9 nTPM
GTEx:158.2 nTPM
FANTOM5:487.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA021616Antibody CAB004035Antibody CAB047324Antibody CAB075739
Glandular cells HighMediumHighHigh







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.9
overview
Male, age 65
Small intestine sample 232
nTPM: 209.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 298.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 206.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 284.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 158.2
Samples: 187

Max nTPM: 642.0
Min nTPM: 5.2
Std nTPM: 120.5
Median nTPM: 111.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 642.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 547.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 488.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 452.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 443.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 440.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 427.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 419.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 415.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 407.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 393.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 377.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 363.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 357.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 357.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 339.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 331.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 331.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 329.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 324.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 318.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 310.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 304.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 303.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 301.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 299.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 297.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 290.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 290.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 288.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 287.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 285.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 282.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 279.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 278.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 278.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 274.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 270.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 267.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 260.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 255.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 255.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 252.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 252.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 245.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 242.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 236.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 223.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 221.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 213.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 208.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 206.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 205.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 203.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 201.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 200.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 197.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 196.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 196.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 189.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 186.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 186.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 183.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 182.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 182.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 180.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 179.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 178.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 176.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 176.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 176.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 169.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 167.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 165.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 165.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 164.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 160.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 150.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 148.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 141.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 140.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 137.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 136.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 133.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 127.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 126.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 124.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 120.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 119.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 118.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 116.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 114.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 113.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 111.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 111.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 110.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 108.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 107.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 105.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 105.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 104.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 104.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 101.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 100.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 98.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 98.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 97.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 95.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 94.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 93.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 93.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 93.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 92.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 92.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 91.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 89.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 89.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 88.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 88.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 88.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 88.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 87.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 87.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 87.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 86.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 86.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 84.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 82.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 82.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 79.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 76.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 76.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 76.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 75.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 72.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 70.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 69.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 69.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 68.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 67.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 66.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 66.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 65.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 65.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 59.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 58.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 57.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 57.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 56.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 54.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 54.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 53.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 51.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 51.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 50.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 48.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 48.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 48.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 44.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 44.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 42.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 42.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 39.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 38.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 36.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 36.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 36.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 35.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 35.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 35.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 34.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 32.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 32.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 32.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 31.7
GTEX-1192X-2526-SM-59868 50-59 years, male 30.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 30.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 29.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 28.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 27.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 26.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 26.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 22.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 22.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 22.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 20.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 5.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

487.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 487.7
FF:10024-101D6 15,40,85 years, mixed 487.7

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