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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1130.5 nTPM
FANTOM5:874.7 Scaled Tags Per Million
Pig:751.5 nTPM
Allen mouse:13.1 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1130.5
Sample id Sample description nTPM
Area postrema
nTPM: 937.6
2799 Male, age 61, both hemispheres 1164.4
2306 Male, age 80, both hemispheres 958.6
2054 Male, age 76, both hemispheres 689.8
Dorsal medullary reticular nucleus
nTPM: 896.1
2040 Female, age 85, both hemispheres 1105.7
2373 Male, age 61, both hemispheres 802.4
2088 Male, age 76, both hemispheres 780.0
Dorsal motor vagal complex
nTPM: 787.1
2000 Male, age 74, unknown 925.0
2133 Female, age 91, both hemispheres 846.2
2185 Male, age 76, both hemispheres 821.5
2844 Male, age 55, unknown 821.4
2797 Male, age 61, both hemispheres 809.5
2643 Male, age 74, both hemispheres 759.0
2813 Female, age 72, unknown 705.9
2807 Female, age 85, both hemispheres 608.3
Gigantocellular reticular nuclei, medullary
nTPM: 942.5
2462 Male, age 74, both hemispheres 1018.8
1876 Female, age 85, both hemispheres 1005.4
2314 Male, age 61, both hemispheres 984.5
2387 Female, age 91, both hemispheres 940.0
2310 Male, age 80, both hemispheres 902.0
2022 Male, age 76, right hemisphere 804.4
Gigantocellular reticular nuclei, pars
nTPM: 944.5
2168 Male, age 76, both hemispheres 1090.8
2084 Female, age 85, both hemispheres 975.8
2336 Male, age 61, both hemispheres 931.5
2330 Male, age 80, both hemispheres 902.7
2706 Male, age 80, both hemispheres 821.5
Inferior olive
nTPM: 953.1
2563 Male, age 74, both hemispheres 1092.1
2085 Female, age 85, both hemispheres 1042.0
2178 Male, age 61, both hemispheres 920.9
2628 Female, age 91, both hemispheres 903.2
2379 Male, age 80, both hemispheres 807.1
Lateral medullary reticular nucleus
nTPM: 988.3
2305 Male, age 74, both hemispheres 1183.7
2852 Male, age 80, both hemispheres 1056.2
2044 Male, age 76, both hemispheres 1011.6
2190 Female, age 85, both hemispheres 942.4
2374 Male, age 61, both hemispheres 890.3
2804 Female, age 91, both hemispheres 845.5
Medial olivary nucleus
nTPM: 1033.8
1962 Male, age 76, both hemispheres 1162.8
2138 Female, age 91, both hemispheres 1037.2
1943 Male, age 61, both hemispheres 995.0
2851 Male, age 80, both hemispheres 940.2
Medial vestibular nucleus
nTPM: 944.8
2801 Male, age 74, both hemispheres 1053.7
2093 Male, age 80, both hemispheres 977.5
2803 Female, age 91, both hemispheres 945.2
2624 Male, age 61, both hemispheres 944.8
2743 Female, age 85, both hemispheres 884.2
2134 Male, age 76, both hemispheres 863.6
Motor hypoglossal nucleus
nTPM: 908.8
2125 Female, age 91, both hemispheres 1026.2
2132 Female, age 85, both hemispheres 1025.9
2182 Male, age 80, both hemispheres 955.9
2461 Male, age 61, both hemispheres 860.1
2277 Male, age 76, both hemispheres 676.1
Nucleus ambiguus
nTPM: 1130.5
2071 Male, age 76, both hemispheres 1194.2
2096 Female, age 85, both hemispheres 1066.9
Nucleus cuneatus
nTPM: 870.7
2100 Male, age 76, both hemispheres 1026.1
2808 Female, age 85, both hemispheres 978.6
2564 Male, age 74, both hemispheres 970.4
2380 Male, age 80, both hemispheres 899.4
2131 Male, age 76, both hemispheres 867.4
2381 Male, age 80, both hemispheres 842.5
2376 Male, age 61, both hemispheres 813.3
2562 Male, age 61, both hemispheres 789.7
2805 Female, age 91, both hemispheres 648.8
Nucleus gracilis
nTPM: 957.0
2627 Male, age 74, both hemispheres 1044.6
2382 Male, age 80, both hemispheres 985.8
2299 Female, age 85, both hemispheres 840.7
Nucleus raphe obscurus
nTPM: 1052.8
2845 Female, age 85, midline 1159.3
2142 Male, age 76, midline 1073.7
2800 Male, age 61, midline 925.4
Nucleus raphe pallidus
nTPM: 1107.8
1924 Male, age 61, midline 1198.4
2145 Male, age 76, midline 1124.6
2183 Male, age 80, midline 1000.5
Nucleus tractus solitarii
nTPM: 642.0
2656 Male, age 76, both hemispheres 703.6
2144 Female, age 91, right hemisphere 625.7
2307 Male, age 80, both hemispheres 621.1
2191 Female, age 85, both hemispheres 617.4
Parvicellular reticular nuclei
nTPM: 956.6
2119 Male, age 80, both hemispheres 1002.5
2095 Male, age 76, both hemispheres 981.7
2558 Male, age 74, both hemispheres 885.7
Parvicellular reticular nuclei, medullary
nTPM: 930.6
2189 Female, age 91, both hemispheres 951.3
2091 Female, age 85, both hemispheres 943.5
2181 Male, age 80, left hemisphere 896.8
Peritrigeminal nucleus
nTPM: 1060.8
2067 Female, age 85, both hemispheres 1113.9
2136 Male, age 76, both hemispheres 1061.0
2179 Male, age 61, both hemispheres 1007.6
Prepositus hypoglossal nucleus
nTPM: 938.1
2855 Female, age 85, right hemisphere 1024.9
2086 Male, age 80, both hemispheres 851.3
Spinal trigeminal nucleus, caudal
nTPM: 918.5
2447 Male, age 76, both hemispheres 1003.6
2390 Female, age 91, both hemispheres 962.1
2312 Male, age 61, both hemispheres 924.1
2308 Male, age 80, both hemispheres 892.6
2642 Male, age 74, both hemispheres 810.2
Spinal trigeminal nucleus, interpolar
nTPM: 942.9
2066 Male, age 76, right hemisphere 1063.1
2625 Male, age 61, both hemispheres 1012.4
2033 Male, age 80, both hemispheres 893.7
2389 Female, age 91, both hemispheres 887.3
2386 Female, age 85, both hemispheres 858.2
Spinal vestibular nucleus
nTPM: 939.3
2748 Male, age 76, both hemispheres 1035.3
2186 Female, age 91, both hemispheres 962.0
2806 Female, age 85, both hemispheres 951.8
2780 Male, age 80, both hemispheres 933.2
2384 Male, age 74, both hemispheres 917.3
2796 Male, age 61, both hemispheres 836.0
Superior vestibular nucleus
nTPM: 954.9
2061 Male, age 76, both hemispheres 1034.1
2015 Male, age 80, both hemispheres 970.4
2383 Male, age 74, both hemispheres 860.3
Ventral medullary reticular nucleus
nTPM: 900.0
2060 Male, age 76, both hemispheres 977.7
2372 Male, age 61, both hemispheres 822.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 947.8
1986 Male, age 76, both hemispheres 1017.9
2741 Female, age 85, both hemispheres 960.0
2118 Male, age 80, both hemispheres 946.4
2180 Male, age 61, both hemispheres 927.6
2302 Female, age 91, both hemispheres 887.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

874.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 874.7
FF:10174-103C3 60 years, female 952.6
FF:10038-101F2 18-64 years, mixed 868.1
FF:10155-103A2 76 years, female 803.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

751.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 751.5
Samples: 4

Max nTPM: 826.0
Min nTPM: 665.1
Sample A Female 763.1
Sample B Female 665.1
Sample C Male 826.0
Sample D Male 751.8

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.1
74510104 Antisense, RP_060208_01_A08, Mouse strain C57BL/6J (56 days, male) 13.1

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